Literature DB >> 11101214

Measurement of one-bond 15N-13C' dipolar couplings in medium sized proteins.

J J Chou1, F Delaglio, A Bax.   

Abstract

A simple and accurate method is described for measurement of 1J(C'N) splittings in isotopically enriched proteins. The method is of the quantitative J correlation type, and the 1J(C'N) splitting is derived from the relative intensity in two 3D TROSY-HNCO spectra with 1J(C'N) dephasing intervals of approximately 1/(2 1J(C'N)) (reference intensity) and approximately 1/1J(C'N) (residual intensity). If the two spectra are recorded under identical conditions and with the same number of scans, the random error in the 1J(C'N) value extracted in this manner is inversely related to the signal-to-noise (S/N) in the reference spectrum. A S/N of 30:1 in the reference spectrum yields random errors of less than 0.2 Hz in the extracted 1J(C'N) value. Dipolar couplings obtained from the difference in 1J(C'N) splitting in the isotropic and liquid crystalline phase for the C-terminal domain of calmodulin are in excellent agreement with its 1.68-A crystal structure, but agree considerably less with the 2.2-A structure.

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Year:  2000        PMID: 11101214     DOI: 10.1023/a:1008358318863

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  18 in total

1.  Evaluation of cross-correlation effects and measurement of one-bond couplings in proteins with short transverse relaxation times.

Authors:  G Kontaxis; G M Clore; A Bax
Journal:  J Magn Reson       Date:  2000-03       Impact factor: 2.229

2.  The use of dipolar couplings for determining the solution structure of rat apo-S100B(betabeta).

Authors:  A C Drohat; N Tjandra; D M Baldisseri; D J Weber
Journal:  Protein Sci       Date:  1999-04       Impact factor: 6.725

Review 3.  Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra.

Authors:  M Ottiger; F Delaglio; A Bax
Journal:  J Magn Reson       Date:  1998-04       Impact factor: 2.229

4.  Structure of calmodulin refined at 2.2 A resolution.

Authors:  Y S Babu; C E Bugg; W J Cook
Journal:  J Mol Biol       Date:  1988-11-05       Impact factor: 5.469

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

6.  Single Transition-to-single Transition Polarization Transfer (ST2-PT) in [15N,1H]-TROSY.

Authors:  K V Pervushin; G Wider; K Wüthrich
Journal:  J Biomol NMR       Date:  1998-08       Impact factor: 2.835

7.  Order matrix analysis of residual dipolar couplings using singular value decomposition.

Authors:  J A Losonczi; M Andrec; M W Fischer; J H Prestegard
Journal:  J Magn Reson       Date:  1999-06       Impact factor: 2.229

8.  Characterization of magnetically orientable bilayers in mixtures of dihexanoylphosphatidylcholine and dimyristoylphosphatidylcholine by solid-state NMR.

Authors:  C R Sanders; J P Schwonek
Journal:  Biochemistry       Date:  1992-09-22       Impact factor: 3.162

9.  Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution.

Authors:  J R Tolman; J M Flanagan; M A Kennedy; J H Prestegard
Journal:  Proc Natl Acad Sci U S A       Date:  1995-09-26       Impact factor: 11.205

10.  Structure of the recombinant Paramecium tetraurelia calmodulin at 1.68 A resolution.

Authors:  C Ban; B Ramakrishnan; K Y Ling; C Kung; M Sundaralingam
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-01-01
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  20 in total

1.  Simultaneous measurement of protein one-bond and two-bond nitrogen-carbon coupling constants using an internally referenced quantitative J-correlated [(15)N,(1)H]-TROSY-HNC experiment.

Authors:  Hans L J Wienk; Mitcheell M Martínez; Gary N Yalloway; Jürgen M Schmidt; Carlos Pérez; Heinz Rüterjans; Frank Löhr
Journal:  J Biomol NMR       Date:  2003-02       Impact factor: 2.835

2.  A combinatorial NMR and EPR approach for evaluating the structural ensemble of partially folded proteins.

Authors:  Jampani Nageswara Rao; Christine C Jao; Balachandra G Hegde; Ralf Langen; Tobias S Ulmer
Journal:  J Am Chem Soc       Date:  2010-06-30       Impact factor: 15.419

3.  Solution structure of (gamma)S-crystallin by molecular fragment replacement NMR.

Authors:  Zhengrong Wu; Frank Delaglio; Keith Wyatt; Graeme Wistow; Ad Bax
Journal:  Protein Sci       Date:  2005-10-31       Impact factor: 6.725

4.  Rapid and accurate structure determination of coiled-coil domains using NMR dipolar couplings: application to cGMP-dependent protein kinase Ialpha.

Authors:  Jason R Schnell; Guo-Ping Zhou; Markus Zweckstetter; Alan C Rigby; James J Chou
Journal:  Protein Sci       Date:  2005-09       Impact factor: 6.725

5.  The structure of phospholamban pentamer reveals a channel-like architecture in membranes.

Authors:  Kirill Oxenoid; James J Chou
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-25       Impact factor: 11.205

6.  Local and global structure of the monomeric subunit of the potassium channel KcsA probed by NMR.

Authors:  Jordan H Chill; John M Louis; Frank Delaglio; Ad Bax
Journal:  Biochim Biophys Acta       Date:  2007-08-24

7.  HIFI-C: a robust and fast method for determining NMR couplings from adaptive 3D to 2D projections.

Authors:  Gabriel Cornilescu; Arash Bahrami; Marco Tonelli; John L Markley; Hamid R Eghbalnia
Journal:  J Biomol NMR       Date:  2007-07-04       Impact factor: 2.835

8.  Assignment-free solution NMR method reveals CesT as an unswapped homodimer.

Authors:  Sigrun Rumpel; Raghavendran Lakshmi; Stefan Becker; Markus Zweckstetter
Journal:  Protein Sci       Date:  2008-08-07       Impact factor: 6.725

9.  An improved algorithm for MFR fragment assembly.

Authors:  Georg Kontaxis
Journal:  J Biomol NMR       Date:  2012-05-13       Impact factor: 2.835

10.  Structure of the integrin alphaIIb transmembrane segment.

Authors:  Tong-Lay Lau; Varun Dua; Tobias S Ulmer
Journal:  J Biol Chem       Date:  2008-04-16       Impact factor: 5.157

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