Literature DB >> 12602951

Fast estimation of hydrogen-bonding donor and acceptor propensities: a GMIPp study.

Albert Salichs1, M López, V Segarra, Modesto Orozco, F Javier Luque.   

Abstract

The suitability of the GMIPp energy functional as a fast, efficient method for estimating the hydrogen-bond donor and acceptor propensities of a wide variety of organic compounds is examined. Comparison of the GMIPp values is made with two experimental hydrogen-bond scales: i) the hydrogen-bond basicity scale for N-heteroaromatics in carbon tetrachloride, and ii) the hydrogen-bond acidities for NH/OH donors and hydrogen-bond basicities of N/O acceptors determined in 1,1,1-trichloroethane. Attention is paid to i) the reliability of semiempirical versus ab initio treatments of the quantum mechanical molecule, ii) the role of solvation, and iii) the effect of including the polarization energy component in the calculation of the GMIPp functional. The statistical analysis of the results reveals that the GMIP functional, which combines electrostatic and steric energy components, predicts with reasonable accuracy and computational efficiency the hydrogen-bond strength for a wide variety of compounds.

Entities:  

Mesh:

Substances:

Year:  2002        PMID: 12602951     DOI: 10.1023/a:1021975932288

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  20 in total

1.  Prediction of drug solubility from Monte Carlo simulations.

Authors:  W L Jorgensen; E M Duffy
Journal:  Bioorg Med Chem Lett       Date:  2000-06-05       Impact factor: 2.823

2.  Blue-Shifting Hydrogen Bonds.

Authors:  Pavel Hobza; Zdenek Havlas
Journal:  Chem Rev       Date:  2000-11-08       Impact factor: 60.622

Review 3.  Recent advances in structure-based rational drug design.

Authors:  P J Gane; P M Dean
Journal:  Curr Opin Struct Biol       Date:  2000-08       Impact factor: 6.809

Review 4.  Using theoretical descriptors in quantitative structure-activity relationships: some toxicological indices.

Authors:  L Y Wilson; G R Famini
Journal:  J Med Chem       Date:  1991-05       Impact factor: 7.446

5.  Hydrogen-bonding parameter and its significance in quantitative structure--activity studies.

Authors:  T Fujita; T Nishioka; M Nakajima
Journal:  J Med Chem       Date:  1977-08       Impact factor: 7.446

6.  A scoring scheme for discriminating between drugs and nondrugs.

Authors:  J Sadowski; H Kubinyi
Journal:  J Med Chem       Date:  1998-08-27       Impact factor: 7.446

7.  Can we learn to distinguish between "drug-like" and "nondrug-like" molecules?

Authors:  A Ajay; W P Walters; M A Murcko
Journal:  J Med Chem       Date:  1998-08-27       Impact factor: 7.446

8.  Is polarization important in cation-pi interactions?

Authors:  E Cubero; F J Luque; M Orozco
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

9.  Low-barrier hydrogen bonds and enzymic catalysis.

Authors:  W W Cleland; M M Kreevoy
Journal:  Science       Date:  1994-06-24       Impact factor: 47.728

10.  A low-barrier hydrogen bond in the catalytic triad of serine proteases.

Authors:  P A Frey; S A Whitt; J B Tobin
Journal:  Science       Date:  1994-06-24       Impact factor: 47.728

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.