Literature DB >> 9600902

Is polarization important in cation-pi interactions?

E Cubero1, F J Luque, M Orozco.   

Abstract

The importance of cation->aromatic polarization effects on cation-pi interactions has been explored. Theoretical calculations demonstrate that polarization is a large contribution to cation-aromatic interactions, and particularly to cation-pi interactions. For a series of compounds with a similar aromatic core, polarization is constant and makes small influence in the relative cation-binding energies. However, when the aromatic core changes polarization contributions might be very different. We found that the generalized molecular interaction potential with polarization is a very fast and powerful tool for the prediction of cation binding of aromatic compounds.

Year:  1998        PMID: 9600902      PMCID: PMC27570          DOI: 10.1073/pnas.95.11.5976

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  13 in total

1.  The Cationminus signpi Interaction.

Authors:  Jennifer C. Ma; Dennis A. Dougherty
Journal:  Chem Rev       Date:  1997-08-05       Impact factor: 60.622

2.  Tight, oriented binding of an aliphatic guest by a new class of water-soluble molecules with hydrophobic binding sites.

Authors:  T J Shepodd; M A Petti; D A Dougherty
Journal:  J Am Chem Soc       Date:  1986-09-01       Impact factor: 15.419

Review 3.  Functional architecture of the nicotinic acetylcholine receptor: from electric organ to brain.

Authors:  J L Galzi; F Revah; A Bessis; J P Changeux
Journal:  Annu Rev Pharmacol Toxicol       Date:  1991       Impact factor: 13.820

4.  Amino-aromatic interactions in proteins.

Authors:  S K Burley; G A Petsko
Journal:  FEBS Lett       Date:  1986-07-28       Impact factor: 4.124

5.  The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin.

Authors:  W L Jorgensen; J Tirado-Rives
Journal:  J Am Chem Soc       Date:  1988-03-01       Impact factor: 15.419

6.  Molecular model of the interaction of bee venom phospholipase A2 with manoalide.

Authors:  A R Ortiz; M T Pisabarro; F Gago
Journal:  J Med Chem       Date:  1993-06-25       Impact factor: 7.446

7.  A mechanism for ion selectivity in potassium channels: computational studies of cation-pi interactions.

Authors:  R A Kumpf; D A Dougherty
Journal:  Science       Date:  1993-09-24       Impact factor: 47.728

8.  The aromatic binding site for tetraethylammonium ion on potassium channels.

Authors:  L Heginbotham; R MacKinnon
Journal:  Neuron       Date:  1992-03       Impact factor: 17.173

9.  Implications of a consensus recognition site for phosphatidylcholine separate from the active site in cobra venom phospholipases A2.

Authors:  A R Ortiz; M T Pisabarro; J Gallego; F Gago
Journal:  Biochemistry       Date:  1992-03-24       Impact factor: 3.162

10.  Isolation and characterization of the gene encoding 2,3-oxidosqualene-lanosterol cyclase from Saccharomyces cerevisiae.

Authors:  Z Shi; C J Buntel; J H Griffin
Journal:  Proc Natl Acad Sci U S A       Date:  1994-07-19       Impact factor: 11.205

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  28 in total

1.  Mixed QM/MM molecular electrostatic potentials.

Authors:  B Hernández; F J Luque; M Orozco
Journal:  J Comput Aided Mol Des       Date:  2000-05       Impact factor: 3.686

2.  Synthetic receptors as models for alkali metal cation-pi binding sites in proteins.

Authors:  S L De Wall; E S Meadows; L J Barbour; G W Gokel
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

3.  Fast estimation of hydrogen-bonding donor and acceptor propensities: a GMIPp study.

Authors:  Albert Salichs; M López; V Segarra; Modesto Orozco; F Javier Luque
Journal:  J Comput Aided Mol Des       Date:  2002 Aug-Sep       Impact factor: 3.686

4.  The geometry and efficacy of cation-pi interactions in a diagonal position of a designed beta-hairpin.

Authors:  Chad D Tatko; Marcey L Waters
Journal:  Protein Sci       Date:  2003-11       Impact factor: 6.725

5.  Attractive noncovalent interactions in asymmetric catalysis: links between enzymes and small molecule catalysts.

Authors:  Robert R Knowles; Eric N Jacobsen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-18       Impact factor: 11.205

6.  Interfacial tryptophan residues: a role for the cation-pi effect?

Authors:  Frederic N R Petersen; Morten Ø Jensen; Claus H Nielsen
Journal:  Biophys J       Date:  2005-09-08       Impact factor: 4.033

7.  Calcium block of single sodium channels: role of a pore-lining aromatic residue.

Authors:  Vincent P Santarelli; Amy L Eastwood; Dennis A Dougherty; Christopher A Ahern; Richard Horn
Journal:  Biophys J       Date:  2007-06-01       Impact factor: 4.033

8.  Indole localization in lipid membranes revealed by molecular simulation.

Authors:  Kristen E Norman; Hugh Nymeyer
Journal:  Biophys J       Date:  2006-06-30       Impact factor: 4.033

9.  The effect of amino groups on the stability of DNA duplexes and triplexes based on purines derived from inosine.

Authors:  E Cubero; R Güimil-García; F J Luque; R Eritja; M Orozco
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

10.  Conformational dynamics and ligand binding in the multi-domain protein PDC109.

Authors:  Hyun Jin Kim; Moo Young Choi; Hyung J Kim; Miguel Llinás
Journal:  PLoS One       Date:  2010-02-18       Impact factor: 3.240

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