Literature DB >> 12547799

Characterization of the photochemical reaction cycle of proteorhodopsin.

György Váró1, Leonid S Brown, Melinda Lakatos, Janos K Lanyi.   

Abstract

Absorption changes in the photocycle of the recently described retinal protein, proteorhodopsin, are analyzed. The transient spectra at pH 9.5, where it acts as a light-driven proton pump, reveal the existence of three spectrally different intermediates, K, M, and N, named in analogy with the photointermediates of bacteriorhodopsin. Model analysis based on time-dependent absorption kinetic signals at four wavelengths suggested the existence of two more spectrally silent intermediates and lead to a sequential reaction scheme with five intermediates, K, M(1), M(2), N, and PR', before decay to the initial state PR. An L-like intermediate was not observed, probably for kinetic reasons. By measuring the light-generated electric signal of an oriented sample, the electrogenicity of each intermediate could be determined. The electrogenicities of the first three intermediates (K, M(1), and M(2)) have small negative value, but the last three components, corresponding to the N and PR' intermediates and PR, are positive and two-orders-of-magnitude larger. These states give the major contributions to the proton translocation across the membrane. The energetic scheme of the photocycle was calculated from the temperature-dependence of the absorption kinetic signals.

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Year:  2003        PMID: 12547799      PMCID: PMC1302695          DOI: 10.1016/S0006-3495(03)74934-0

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  17 in total

1.  Charge motions during the photocycle of pharaonis halorhodopsin.

Authors:  K Ludmann; G Ibron; J K Lanyi; G Váró
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

2.  Characterization of the proton-transporting photocycle of pharaonis halorhodopsin.

Authors:  A Kulcsár; G I Groma; J K Lanyi; G Váró
Journal:  Biophys J       Date:  2000-11       Impact factor: 4.033

3.  Proton transfers in the photochemical reaction cycle of proteorhodopsin.

Authors:  Andrei K Dioumaev; Leonid S Brown; Jennifer Shih; Elena N Spudich; John L Spudich; Janos K Lanyi
Journal:  Biochemistry       Date:  2002-04-30       Impact factor: 3.162

4.  Bacterial rhodopsin: evidence for a new type of phototrophy in the sea.

Authors:  O Béjà; L Aravind; E V Koonin; M T Suzuki; A Hadd; L P Nguyen; S B Jovanovich; C M Gates; R A Feldman; J L Spudich; E N Spudich; E F DeLong
Journal:  Science       Date:  2000-09-15       Impact factor: 47.728

5.  Thermodynamics and energy coupling in the bacteriorhodopsin photocycle.

Authors:  G Váró; J K Lanyi
Journal:  Biochemistry       Date:  1991-05-21       Impact factor: 3.162

6.  Transient spectroscopy of bacterial rhodopsins with an optical multichannel analyzer. 1. Comparison of the photocycles of bacteriorhodopsin and halorhodopsin.

Authors:  L Zimányi; L Keszthelyi; J K Lanyi
Journal:  Biochemistry       Date:  1989-06-13       Impact factor: 3.162

7.  Study of the photocycle and charge motions of the bacteriorhodopsin mutant D96N.

Authors:  C Gergely; C Ganea; G Groma; G Váró
Journal:  Biophys J       Date:  1993-12       Impact factor: 4.033

8.  Time-resolved photoelectric and absorption signals from oriented purple membranes immobilized in gel.

Authors:  A Dér; P Hargittai; J Simon
Journal:  J Biochem Biophys Methods       Date:  1985-03

9.  Effect of acid pH on the absorption spectra and photoreactions of bacteriorhodopsin.

Authors:  P C Mowery; R H Lozier; Q Chae; Y W Tseng; M Taylor; W Stoeckenius
Journal:  Biochemistry       Date:  1979-09-18       Impact factor: 3.162

Review 10.  Retinylidene proteins: structures and functions from archaea to humans.

Authors:  J L Spudich; C S Yang; K H Jung; E N Spudich
Journal:  Annu Rev Cell Dev Biol       Date:  2000       Impact factor: 13.827

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  31 in total

1.  The photochemical reaction cycle of proteorhodopsin at low pH.

Authors:  Melinda Lakatos; Janos K Lanyi; Juliánna Szakács; György Váró
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

2.  The nitrate transporting photochemical reaction cycle of the pharaonis halorhodopsin.

Authors:  Zoltán Bálint; Melinda Lakatos; Constanta Ganea; Janos K Lanyi; György Váró
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

3.  Green proteorhodopsin reconstituted into nanoscale phospholipid bilayers (nanodiscs) as photoactive monomers.

Authors:  Matthew J Ranaghan; Christine T Schwall; Nathan N Alder; Robert R Birge
Journal:  J Am Chem Soc       Date:  2011-10-26       Impact factor: 15.419

4.  Assembling a Correctly Folded and Functional Heptahelical Membrane Protein by Protein Trans-splicing.

Authors:  Michaela Mehler; Carl Elias Eckert; Alena Busche; Jennifer Kulhei; Jonas Michaelis; Johanna Becker-Baldus; Josef Wachtveitl; Volker Dötsch; Clemens Glaubitz
Journal:  J Biol Chem       Date:  2015-09-24       Impact factor: 5.157

5.  Characterization of a Cyanobacterial Chloride-pumping Rhodopsin and Its Conversion into a Proton Pump.

Authors:  Takatoshi Hasemi; Takashi Kikukawa; Naoki Kamo; Makoto Demura
Journal:  J Biol Chem       Date:  2015-11-17       Impact factor: 5.157

6.  First steps of retinal photoisomerization in proteorhodopsin.

Authors:  Martin O Lenz; Robert Huber; Bernhard Schmidt; Peter Gilch; Rolf Kalmbach; Martin Engelhard; Josef Wachtveitl
Journal:  Biophys J       Date:  2006-04-07       Impact factor: 4.033

7.  Characterisation of Schiff base and chromophore in green proteorhodopsin by solid-state NMR.

Authors:  Nicole Pfleger; Mark Lorch; Andreas C Woerner; Sarika Shastri; Clemens Glaubitz
Journal:  J Biomol NMR       Date:  2007-10-30       Impact factor: 2.835

8.  Initial reaction dynamics of proteorhodopsin observed by femtosecond infrared and visible spectroscopy.

Authors:  Karsten Neumann; Mirka-Kristin Verhoefen; Ingrid Weber; Clemens Glaubitz; Josef Wachtveitl
Journal:  Biophys J       Date:  2008-03-07       Impact factor: 4.033

9.  Characterization of the primary photochemistry of proteorhodopsin with femtosecond spectroscopy.

Authors:  Alisa Rupenyan; Ivo H M van Stokkum; Jos C Arents; Rienk van Grondelle; Klaas Hellingwerf; Marie Louise Groot
Journal:  Biophys J       Date:  2008-01-30       Impact factor: 4.033

10.  The EF loop in green proteorhodopsin affects conformation and photocycle dynamics.

Authors:  Michaela Mehler; Frank Scholz; Sandra J Ullrich; Jiafei Mao; Markus Braun; Lynda J Brown; Richard C D Brown; Sarah A Fiedler; Johanna Becker-Baldus; Josef Wachtveitl; Clemens Glaubitz
Journal:  Biophys J       Date:  2013-07-16       Impact factor: 4.033

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