Literature DB >> 21951206

Green proteorhodopsin reconstituted into nanoscale phospholipid bilayers (nanodiscs) as photoactive monomers.

Matthew J Ranaghan1, Christine T Schwall, Nathan N Alder, Robert R Birge.   

Abstract

Over 4000 putative proteorhodopsins (PRs) have been identified throughout the oceans and seas of the Earth. The first of these eubacterial rhodopsins was discovered in 2000 and has expanded the family of microbial proton pumps to all three domains of life. With photophysical properties similar to those of bacteriorhodopsin, an archaeal proton pump, PRs are also generating interest for their potential use in various photonic applications. We perform here the first reconstitution of the minimal photoactive PR structure into nanoscale phospholipid bilayers (nanodiscs) to better understand how protein-protein and protein-lipid interactions influence the photophysical properties of PR. Spectral (steady-state and time-resolved UV-visible spectroscopy) and physical (size-exclusion chromatography and electron microscopy) characterization of these complexes confirms the preparation of a photoactive PR monomer within nanodiscs. Specifically, when embedded within a nanodisc, monomeric PR exhibits a titratable pK(a) (6.5-7.1) and photocycle lifetime (∼100-200 ms) that are comparable to the detergent-solubilized protein. These ndPRs also produce a photoactive blue-shifted absorbance, centered at 377 or 416 nm, that indicates that protein-protein interactions from a PR oligomer are required for a fast photocycle. Moreover, we demonstrate how these model membrane systems allow modulation of the PR photocycle by variation of the discoidal diameter (i.e., 10 or 12 nm), bilayer thickness (i.e., 23 or 26.5 Å), and degree of saturation of the lipid acyl chain. Nanodiscs also offer a highly stable environment of relevance to potential device applications.

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Year:  2011        PMID: 21951206      PMCID: PMC3218432          DOI: 10.1021/ja2070957

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  78 in total

1.  Characterization and photochemistry of 13-desmethyl bacteriorhodopsin.

Authors:  Nathan B Gillespie; Lei Ren; Lavoisier Ramos; Heather Daniell; Deborah Dews; Karissa A Utzat; Jeffrey A Stuart; Charles H Buck; Robert R Birge
Journal:  J Phys Chem B       Date:  2005-08-25       Impact factor: 2.991

2.  Nanodiscs separate chemoreceptor oligomeric states and reveal their signaling properties.

Authors:  Thomas Boldog; Stephen Grimme; Mingshan Li; Stephen G Sligar; Gerald L Hazelbauer
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-24       Impact factor: 11.205

3.  Light-powering Escherichia coli with proteorhodopsin.

Authors:  Jessica M Walter; Derek Greenfield; Carlos Bustamante; Jan Liphardt
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-02       Impact factor: 11.205

4.  The local phospholipid environment modulates the activation of blood clotting.

Authors:  Andrew W Shaw; Vincent S Pureza; Stephen G Sligar; James H Morrissey
Journal:  J Biol Chem       Date:  2007-01-02       Impact factor: 5.157

5.  Cooperativity in cytochrome P450 3A4: linkages in substrate binding, spin state, uncoupling, and product formation.

Authors:  Ilia G Denisov; Bradley J Baas; Yelena V Grinkova; Stephen G Sligar
Journal:  J Biol Chem       Date:  2007-01-09       Impact factor: 5.157

6.  Time-resolved FTIR spectroscopy of the photointermediates involved in fast transient H+ release by proteorhodopsin.

Authors:  Yaowu Xiao; Ranga Partha; Richard Krebs; Mark Braiman
Journal:  J Phys Chem B       Date:  2005-01-13       Impact factor: 2.991

7.  Thermotropic phase transition in soluble nanoscale lipid bilayers.

Authors:  Ilia G Denisov; Mark A McLean; Andrew W Shaw; Yelena V Grinkova; Stephen G Sligar
Journal:  J Phys Chem B       Date:  2005-08-18       Impact factor: 2.991

8.  Rhodopsin in nanodiscs has native membrane-like photointermediates.

Authors:  Hisao Tsukamoto; Istvan Szundi; James W Lewis; David L Farrens; David S Kliger
Journal:  Biochemistry       Date:  2011-05-13       Impact factor: 3.162

9.  Nanodiscs unravel the interaction between the SecYEG channel and its cytosolic partner SecA.

Authors:  Meriem Alami; Kush Dalal; Barbara Lelj-Garolla; Stephen G Sligar; Franck Duong
Journal:  EMBO J       Date:  2007-03-29       Impact factor: 11.598

10.  FTIR study of the retinal Schiff base and internal water molecules of proteorhodopsin.

Authors:  Daisuke Ikeda; Yuji Furutani; Hideki Kandori
Journal:  Biochemistry       Date:  2007-04-12       Impact factor: 3.162

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  20 in total

1.  The EF loop in green proteorhodopsin affects conformation and photocycle dynamics.

Authors:  Michaela Mehler; Frank Scholz; Sandra J Ullrich; Jiafei Mao; Markus Braun; Lynda J Brown; Richard C D Brown; Sarah A Fiedler; Johanna Becker-Baldus; Josef Wachtveitl; Clemens Glaubitz
Journal:  Biophys J       Date:  2013-07-16       Impact factor: 4.033

2.  Photocycle-dependent conformational changes in the proteorhodopsin cross-protomer Asp-His-Trp triad revealed by DNP-enhanced MAS-NMR.

Authors:  Jakob Maciejko; Jagdeep Kaur; Johanna Becker-Baldus; Clemens Glaubitz
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-04       Impact factor: 11.205

Review 3.  Nanodiscs in Membrane Biochemistry and Biophysics.

Authors:  Ilia G Denisov; Stephen G Sligar
Journal:  Chem Rev       Date:  2017-02-08       Impact factor: 60.622

4.  Characterization of the ground state dynamics of proteorhodopsin by NMR and optical spectroscopies.

Authors:  Jochen Stehle; Frank Scholz; Frank Löhr; Sina Reckel; Christian Roos; Michaela Blum; Markus Braun; Clemens Glaubitz; Volker Dötsch; Josef Wachtveitl; Harald Schwalbe
Journal:  J Biomol NMR       Date:  2012-11-17       Impact factor: 2.835

Review 5.  Nanodiscs as a new tool to examine lipid-protein interactions.

Authors:  Mary A Schuler; Ilia G Denisov; Stephen G Sligar
Journal:  Methods Mol Biol       Date:  2013

6.  Calcium-dependent ligand binding and G-protein signaling of family B GPCR parathyroid hormone 1 receptor purified in nanodiscs.

Authors:  Nivedita Mitra; Yuting Liu; Jian Liu; Eugene Serebryany; Victoria Mooney; Brian T DeVree; Roger K Sunahara; Elsa C Y Yan
Journal:  ACS Chem Biol       Date:  2013-01-30       Impact factor: 5.100

7.  Expression, purification, and spectral tuning of RhoGC, a retinylidene/guanylyl cyclase fusion protein and optogenetics tool from the aquatic fungus Blastocladiella emersonii.

Authors:  Melissa M Trieu; Erin L Devine; Lindsey B Lamarche; Aaron E Ammerman; Jordan A Greco; Robert R Birge; Douglas L Theobald; Daniel D Oprian
Journal:  J Biol Chem       Date:  2017-05-04       Impact factor: 5.157

8.  Functionally Active Membrane Proteins Incorporated in Mesostructured Silica Films.

Authors:  Justin P Jahnke; Matthew N Idso; Sunyia Hussain; Matthias J N Junk; Julia M Fisher; David D Phan; Songi Han; Bradley F Chmelka
Journal:  J Am Chem Soc       Date:  2018-03-13       Impact factor: 15.419

9.  Emerging Diversity in Lipid-Protein Interactions.

Authors:  Valentina Corradi; Besian I Sejdiu; Haydee Mesa-Galloso; Haleh Abdizadeh; Sergei Yu Noskov; Siewert J Marrink; D Peter Tieleman
Journal:  Chem Rev       Date:  2019-02-13       Impact factor: 60.622

10.  Nanodiscs in the studies of membrane-bound cytochrome P450 enzymes.

Authors:  A Luthra; M Gregory; Y V Grinkova; I G Denisov; S G Sligar
Journal:  Methods Mol Biol       Date:  2013
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