Literature DB >> 8176734

Ultrafast measurements of geminate recombination of NO with site-specific mutants of human myoglobin.

J W Petrich1, J C Lambry, S Balasubramanian, D G Lambright, S G Boxer, J L Martin.   

Abstract

Flash photolysis studies of NO recombination to heme proteins offer a direct probe of protein structural changes on the tens of picoseconds timescale where they can be compared with molecular dynamics simulations. The geminate recombination of NO to site-specific mutants of human myoglobin (Mb) was studied following photodissociation of the MbNO form. Single amino acid changes were introduced at positions Val68, His64, Lys45 and Asp60 because motions of residues at these positions are generally regarded as important for the mechanism of ligand binding. In sharp contrast to the properties of simple porphyrin-NO complexes, the rebinding kinetics are found to be non-exponential for all mutants, even in aqueous solution at 298 K. The Val68 and His64 mutants substantially affect the NO rebinding rates but, surprisingly, so do changes on the protein surface that are further away from the iron. These changes in kinetics occur on a tens of picoseconds timescale, and therefore there is either a fast communication between protein residues over quite long distances or there are subtle differences in protein structure that exert great control over the reaction dynamics. Various models for the rebinding kinetics are evaluated. A model-free approach to data analysis using the maximum entropy method is found to be most useful. This analysis shows that the rate distributions are very different for the mutants, but are generally bimodal.

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Year:  1994        PMID: 8176734     DOI: 10.1006/jmbi.1994.1302

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  11 in total

1.  Multiple geminate ligand recombinations in human hemoglobin.

Authors:  R M Esquerra; R A Goldbeck; S H Reaney; A M Batchelder; Y Wen; J W Lewis; D S Kliger
Journal:  Biophys J       Date:  2000-06       Impact factor: 4.033

2.  NO binding kinetics in myoglobin investigated by picosecond Fe K-edge absorption spectroscopy.

Authors:  Mahsa Silatani; Frederico A Lima; Thomas J Penfold; Jochen Rittmann; Marco E Reinhard; Hannelore M Rittmann-Frank; Camelia Borca; Daniel Grolimund; Christopher J Milne; Majed Chergui
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-05       Impact factor: 11.205

3.  Heme photolysis occurs by ultrafast excited state metal-to-ring charge transfer.

Authors:  S Franzen; L Kiger; C Poyart; J L Martin
Journal:  Biophys J       Date:  2001-05       Impact factor: 4.033

4.  Water and ligand entry in myoglobin: assessing the speed and extent of heme pocket hydration after CO photodissociation.

Authors:  Robert A Goldbeck; Shyam Bhaskaran; Cheri Ortega; Juan L Mendoza; John S Olson; Jayashree Soman; David S Kliger; Raymond M Esquerra
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-23       Impact factor: 11.205

5.  Tryptophan-to-heme electron transfer in ferrous myoglobins.

Authors:  Roberto Monni; André Al Haddad; Frank van Mourik; Gerald Auböck; Majed Chergui
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-20       Impact factor: 11.205

6.  Femtosecond time resolution in x-ray diffraction experiments.

Authors:  R Neutze; J Hajdu
Journal:  Proc Natl Acad Sci U S A       Date:  1997-05-27       Impact factor: 11.205

7.  Spin-dependent mechanism for diatomic ligand binding to heme.

Authors:  Stefan Franzen
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-11       Impact factor: 11.205

8.  Human myoglobin recognition of oxygen: dynamics of the energy landscape.

Authors:  Yuhong Wang; J Spencer Baskin; Tianbing Xia; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-15       Impact factor: 11.205

9.  Multiphoton absorption of myoglobin-nitric oxide complex: relaxation by D-NEMD of a stationary state.

Authors:  Grazia Cottone; Gianluca Lattanzi; Giovanni Ciccotti; Ron Elber
Journal:  J Phys Chem B       Date:  2012-03-06       Impact factor: 2.991

10.  Ultrafast ligand rebinding in the heme domain of the oxygen sensors FixL and Dos: general regulatory implications for heme-based sensors.

Authors:  Ursula Liebl; Latifa Bouzhir-Sima; Michel Negrerie; Jean-Louis Martin; Marten H Vos
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-23       Impact factor: 11.205

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