Literature DB >> 2544737

Ligand and proton exchange dynamics in recombinant human myoglobin mutants.

D G Lambright1, S Balasubramanian, S G Boxer.   

Abstract

Site-specific mutants of human myoglobin have been prepared in which lysine 45 is replaced by arginine (K45R) and aspartate 60 by glutamate (D60E), in order to examine the influence of these residues and their interaction on the dynamics of the protein. These proteins were studied by a variety of methods, including one and two-dimensional proton nuclear magnetic resonance spectroscopy, exchange kinetics for the distal and proximal histidine NH protons as a function of pH in the met cyano forms, flash photolysis of the CO forms, and ligand replacement kinetics. The electronic absorption and proton nuclear magnetic resonance spectra of the CO forms of these proteins are virtually identical, indicating that the structure of the heme pocket is unaltered by these mutations. There are, however, substantial changes in the dynamics of both CO binding and proton exchange for the mutant K45R, whereas the mutant D60E exhibits behavior indistinguishable from the reference human myoglobin. K45R has a faster CO bimolecular recombination rate and slower CO off-rate relative to the reference. The kinetics for CO binding are independent of pH (6.5 to 10) as well as ionic strength (0 to 1 M-NaCl). The exchange rate for the distal histidine NH is substantially lower for K45R than the reference, whereas the proximal histidine NH exchange rate is unaltered. The exchange behavior of the human proteins is similar to that reported for a comparison of the exchange rates for myoglobins having lysine at position 45 with sperm whale myoglobin, which has arginine at this position. This indicates that the differences in exchange rates reflects largely the Lys----Arg substitution. The lack of a simple correlation for the CO kinetics with this substitution means that these are sensitive to other factors as well. Specific kinetic models, whereby substitution of arginine for lysine at position 45 can affect ligand binding dynamics, are outlined. These experiments demonstrate that a relatively conservative change of a surface residue can substantially perturb ligand and proton exchange dynamics in a manner that is not readily predicted from the static structures.

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Year:  1989        PMID: 2544737     DOI: 10.1016/0022-2836(89)90456-7

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  13 in total

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Journal:  Biophys J       Date:  2001-03       Impact factor: 4.033

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Journal:  J Biol Chem       Date:  2008-03-20       Impact factor: 5.157

4.  Ligand binding to heme proteins. VI. Interconversion of taxonomic substates in carbonmonoxymyoglobin.

Authors:  J B Johnson; D C Lamb; H Frauenfelder; J D Müller; B McMahon; G U Nienhaus; R D Young
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

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Authors:  Stefan Franzen
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-11       Impact factor: 11.205

6.  Perturbations of the distal heme pocket in human myoglobin mutants probed by infrared spectroscopy of bound CO: correlation with ligand binding kinetics.

Authors:  S Balasubramanian; D G Lambright; S G Boxer
Journal:  Proc Natl Acad Sci U S A       Date:  1993-05-15       Impact factor: 11.205

7.  Molecular evolution of myoglobin in the Tibetan Plateau endemic schizothoracine fish (Cyprinidae, Teleostei) and tissue-specific expression changes under hypoxia.

Authors:  Delin Qi; Yan Chao; Yongli Zhao; Mingzhe Xia; Rongrong Wu
Journal:  Fish Physiol Biochem       Date:  2017-12-11       Impact factor: 2.794

8.  Accelerated evolutionary rate of the myoglobin gene in long-diving whales.

Authors:  Mariana F Nery; José Ignacio Arroyo; Juan C Opazo
Journal:  J Mol Evol       Date:  2013-07-16       Impact factor: 2.395

9.  Application of molecular dynamics and free energy perturbation methods to metalloporphyrin-ligand systems II: CO and dioxygen binding to myoglobin.

Authors:  M A Lopez; P A Kollman
Journal:  Protein Sci       Date:  1993-11       Impact factor: 6.725

10.  1H and 15N resonance assignments and secondary structure of the carbon monoxide complex of sperm whale myoglobin.

Authors:  Y Thériault; T C Pochapsky; C Dalvit; M L Chiu; S G Sligar; P E Wright
Journal:  J Biomol NMR       Date:  1994-07       Impact factor: 2.835

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