Literature DB >> 20643970

Picosecond primary structural transition of the heme is retarded after nitric oxide binding to heme proteins.

Sergei G Kruglik1, Byung-Kuk Yoo, Stefan Franzen, Marten H Vos, Jean-Louis Martin, Michel Negrerie.   

Abstract

We investigated the ultrafast structural transitions of the heme induced by nitric oxide (NO) binding for several heme proteins by subpicosecond time-resolved resonance Raman and femtosecond transient absorption spectroscopy. We probed the heme iron motion by the evolution of the iron-histidine Raman band intensity after NO photolysis. Unexpectedly, we found that the heme response and iron motion do not follow the kinetics of NO rebinding. Whereas NO dissociation induces quasi-instantaneous iron motion and heme doming (<0.6 ps), the reverse process results in a much slower picosecond movement of the iron toward the planar heme configuration after NO binding. The time constant for this primary domed-to-planar heme transition varies among proteins (approximately 30 ps for myoglobin and its H64V mutant, approximately 15 ps for hemoglobin, approximately 7 ps for dehaloperoxidase, and approximately 6 ps for cytochrome c) and depends upon constraints exerted by the protein structure on the heme cofactor. This observed phenomenon constitutes the primary structural transition in heme proteins induced by NO binding.

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Year:  2010        PMID: 20643970      PMCID: PMC2922218          DOI: 10.1073/pnas.0912938107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  A steric mechanism for inhibition of CO binding to heme proteins.

Authors:  G S Kachalova; A N Popov; H D Bartunik
Journal:  Science       Date:  1999-04-16       Impact factor: 47.728

2.  ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL.

Authors:  J MONOD; J WYMAN; J P CHANGEUX
Journal:  J Mol Biol       Date:  1965-05       Impact factor: 5.469

3.  Spin-dependent mechanism for diatomic ligand binding to heme.

Authors:  Stefan Franzen
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-11       Impact factor: 11.205

4.  The effect of iron displacement out of the porphyrin plane on the resonance Raman spectra of heme proteins and iron porphyrins.

Authors:  S S Stavrov
Journal:  Biophys J       Date:  1993-11       Impact factor: 4.033

Review 5.  CO as a cellular signaling molecule.

Authors:  Hong Pyo Kim; Stefan W Ryter; Augustine M K Choi
Journal:  Annu Rev Pharmacol Toxicol       Date:  2006       Impact factor: 13.820

6.  Molecular basis for nitric oxide dynamics and affinity with Alcaligenes xylosoxidans cytochrome c.

Authors:  Sergei G Kruglik; Jean-Christophe Lambry; Simona Cianetti; Jean-Louis Martin; Robert R Eady; Colin R Andrew; Michel Negrerie
Journal:  J Biol Chem       Date:  2006-12-11       Impact factor: 5.157

7.  Tension in haemoglobin revealed by Fe-His(F8) bond rupture in the fully liganded T-state.

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Journal:  J Mol Biol       Date:  1997-08-15       Impact factor: 5.469

8.  Origin of the red shifts in the optical absorption bands of nonplanar tetraalkylporphyrins.

Authors:  Raid E Haddad; Stéphanie Gazeau; Jacques Pécaut; Jean-Claude Marchon; Craig J Medforth; John A Shelnutt
Journal:  J Am Chem Soc       Date:  2003-02-05       Impact factor: 15.419

9.  Primary protein response after ligand photodissociation in carbonmonoxy myoglobin.

Authors:  Akira Sato; Ying Gao; Teizo Kitagawa; Yasuhisa Mizutani
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-21       Impact factor: 11.205

10.  Subpicosecond oxygen trapping in the heme pocket of the oxygen sensor FixL observed by time-resolved resonance Raman spectroscopy.

Authors:  Sergei G Kruglik; Audrius Jasaitis; Klara Hola; Taku Yamashita; Ursula Liebl; Jean-Louis Martin; Marten H Vos
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-19       Impact factor: 11.205

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  10 in total

1.  NO binding kinetics in myoglobin investigated by picosecond Fe K-edge absorption spectroscopy.

Authors:  Mahsa Silatani; Frederico A Lima; Thomas J Penfold; Jochen Rittmann; Marco E Reinhard; Hannelore M Rittmann-Frank; Camelia Borca; Daniel Grolimund; Christopher J Milne; Majed Chergui
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-05       Impact factor: 11.205

2.  Motion of proximal histidine and structural allosteric transition in soluble guanylate cyclase.

Authors:  Byung-Kuk Yoo; Isabelle Lamarre; Jean-Louis Martin; Fabrice Rappaport; Michel Negrerie
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-23       Impact factor: 11.205

3.  Probing the local electronic and geometric properties of the heme iron center in a H-NOX domain.

Authors:  Zhou Dai; Elizabeth M Boon
Journal:  J Inorg Biochem       Date:  2011-03-13       Impact factor: 4.155

4.  Tryptophan-to-heme electron transfer in ferrous myoglobins.

Authors:  Roberto Monni; André Al Haddad; Frank van Mourik; Gerald Auböck; Majed Chergui
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-20       Impact factor: 11.205

5.  Direct observation of subpicosecond vibrational dynamics in photoexcited myoglobin.

Authors:  C Ferrante; E Pontecorvo; G Cerullo; M H Vos; T Scopigno
Journal:  Nat Chem       Date:  2016-09-05       Impact factor: 24.427

6.  Vibrational coherence spectroscopy of the heme domain in the CO-sensing transcriptional activator CooA.

Authors:  Venugopal Karunakaran; Abdelkrim Benabbas; Hwan Youn; Paul M Champion
Journal:  J Am Chem Soc       Date:  2011-10-28       Impact factor: 15.419

7.  Multiphoton absorption of myoglobin-nitric oxide complex: relaxation by D-NEMD of a stationary state.

Authors:  Grazia Cottone; Gianluca Lattanzi; Giovanni Ciccotti; Ron Elber
Journal:  J Phys Chem B       Date:  2012-03-06       Impact factor: 2.991

Review 8.  Implications of short time scale dynamics on long time processes.

Authors:  Krystel El Hage; Sebastian Brickel; Sylvain Hermelin; Geoffrey Gaulier; Cédric Schmidt; Luigi Bonacina; Siri C van Keulen; Swarnendu Bhattacharyya; Majed Chergui; Peter Hamm; Ursula Rothlisberger; Jean-Pierre Wolf; Markus Meuwly
Journal:  Struct Dyn       Date:  2017-12-22       Impact factor: 2.920

9.  Observing heme doming in myoglobin with femtosecond X-ray absorption spectroscopy.

Authors:  M Levantino; H T Lemke; G Schirò; M Glownia; A Cupane; M Cammarata
Journal:  Struct Dyn       Date:  2015-05-29       Impact factor: 2.920

10.  Solvent Composition Drives the Rebinding Kinetics of Nitric Oxide to Microperoxidase.

Authors:  Padmabati Mondal; Markus Meuwly
Journal:  Sci Rep       Date:  2018-03-27       Impact factor: 4.379

  10 in total

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