Literature DB >> 12427971

Ultrafast surface hydration dynamics and expression of protein functionality: alpha -Chymotrypsin.

Samir Kumar Pal1, Jorge Peon, Ahmed H Zewail.   

Abstract

We report studies of hydration dynamics at the surface of the enzyme protein bovine pancreatic alpha-chymotrypsin. The probe is the well known 1-anilinonaphthalene-8-sulfonate, which binds selectively in the native state of the protein, not the molten globule, as shown by x-ray crystallography. With femtosecond time resolution, we examined the hydration dynamics at two pHs, when the protein is physiologically in the inactive state (pH 3.6) or the active state (pH 6.7); the global structure and the binding site remain the same. The hydration correlation function, C(t), whose decay is governed by the rotational and translational motions of water molecules at the site, shows the behavior observed in this laboratory for other proteins, Subtilisin Carlsberg and Monellin, using the intrinsic amino acid tryptophan as a probe for surface hydration. However, the time scales and amplitudes vary drastically at the two pHs. For the inactive protein state, C(t) decays with an ultrafast component, close to bulk-type behavior, but 50% of the C(t) decays at a much slower rate, tau = 43 ps. In contrast, for the active state, the ultrafast component becomes dominant (90%) and the slow component changes to a faster decay, tau = 28 ps. These results indicate that in the active state water molecules in the hydration layer around the site have a high degree of mobility, whereas in the inactive state the water is more rigidly structured. For the substrate-enzyme complex, the function and dynamics at the probe site are correlated, and the relevance to the enzymatic action is clear.

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Year:  2002        PMID: 12427971      PMCID: PMC137710          DOI: 10.1073/pnas.242600399

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  14 in total

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Authors:  Samir Kumar Pal; Jorge Peon; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-12       Impact factor: 11.205

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Authors:  L D Weber; A Tulinsky; J D Johnson; M A El-Bayoumi
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Review 7.  Water in enzyme reactions: biophysical aspects of hydration-dehydration processes.

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8.  Hydration at the surface of the protein Monellin: dynamics with femtosecond resolution.

Authors:  Jorge Peon; Samir Kumar Pal; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-12       Impact factor: 11.205

9.  Interaction of alpha-chymotrypsin with the fluorescent probe 1-anilinonaphthalene-8-sulfonate in solution.

Authors:  J D Johnson; M A El-Bayoumi; L D Weber; A Tulinsky
Journal:  Biochemistry       Date:  1979-04-03       Impact factor: 3.162

10.  Femtosecond studies of protein-DNA binding and dynamics: histone I.

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Journal:  Chemphyschem       Date:  2001-04-17       Impact factor: 3.102

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  17 in total

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5.  Site-specific hydration dynamics in the nonpolar core of a molten globule by dynamic nuclear polarization of water.

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Review 7.  At the dawn of the 21st century: Is dynamics the missing link for understanding enzyme catalysis?

Authors:  Shina C L Kamerlin; Arieh Warshel
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8.  Dimensionality of diffusive exploration at the protein interface in solution.

Authors:  Denis S Grebenkov; Yanina A Goddard; Galina Diakova; Jean-Pierre Korb; Robert G Bryant
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9.  Site- and sequence-selective ultrafast hydration of DNA.

Authors:  Samir Kumar Pal; Liang Zhao; Tianbing Xia; Ahmed H Zewail
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10.  Water at DNA surfaces: ultrafast dynamics in minor groove recognition.

Authors:  Samir Kumar Pal; Liang Zhao; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-18       Impact factor: 11.205

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