Literature DB >> 10961341

Water in enzyme reactions: biophysical aspects of hydration-dehydration processes.

Y Pocker1.   

Abstract

Water has been recognized as one of the major structuring factors in biological macromolecules. Indeed, water clusters influence many aspects of biological function, and the water-protein interaction has long been recognized as a major determinant of chain folding, conformational stability, internal dynamics, binding specificity and catalysis. I discuss here several themes arising from recent progress in understanding structural aspects of 'direct' and 'indirect' ligands in terms of enzyme-substrate interactions, and the role of water bridges in enzyme catalysis. The review also attempts to illuminate issues relating to efficiency, through solvent interactions associated with enzymic specificity, and versatility. Over the years, carbonic anhydrase (CA; carbonate hydrolyase, EC 4.2.1.1) has played a significant role in the continuing delineation of principles underlying the role of water in enzyme reactions. As a result of its pronounced catalytic power and robust constitution CA was transformed into a veritable 'laboratory' in which active site mechanisms were rigorously tested and explored.

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Year:  2000        PMID: 10961341     DOI: 10.1007/PL00000741

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  15 in total

1.  A model for water motion in crystals of lysozyme based on an incoherent quasielastic neutron-scattering study.

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Review 2.  The use of gas-phase substrates to study enzyme catalysis at low hydration.

Authors:  Rachel V Dunn; Roy M Daniel
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-08-29       Impact factor: 6.237

Review 3.  Dynamics and mechanisms of DNA repair by photolyase.

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4.  Ultrafast solvation dynamics at binding and active sites of photolyases.

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Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-26       Impact factor: 11.205

5.  DFT and MP2 investigations of L-proline and its hydrated complexes.

Authors:  Xiao-Jun Li; Zhi-Jian Zhong; Hai-Zhen Wu
Journal:  J Mol Model       Date:  2011-01-25       Impact factor: 1.810

6.  Introduction to desiccation biology: from old borders to new frontiers.

Authors:  Olivier Leprince; Julia Buitink
Journal:  Planta       Date:  2015-07-04       Impact factor: 4.116

7.  Ultrafast surface hydration dynamics and expression of protein functionality: alpha -Chymotrypsin.

Authors:  Samir Kumar Pal; Jorge Peon; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-11       Impact factor: 11.205

8.  The dynamics of peptide-water interactions in dialanine: An ultrafast amide I 2D IR and computational spectroscopy study.

Authors:  Chi-Jui Feng; Andrei Tokmakoff
Journal:  J Chem Phys       Date:  2017-08-28       Impact factor: 3.488

9.  Detection of a protein-bound water vibration of halorhodopsin in aqueous solution.

Authors:  Tetsuya Fukuda; Kosuke Muroda; Hideki Kandori
Journal:  Biophysics (Nagoya-shi)       Date:  2013-12-21

10.  High-throughput mass spectrometry analysis revealed a role for glucosamine in potentiating recovery following desiccation stress in Chironomus.

Authors:  Leena Thorat; Dasharath Oulkar; Kaushik Banerjee; Sushama M Gaikwad; Bimalendu B Nath
Journal:  Sci Rep       Date:  2017-06-16       Impact factor: 4.379

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