Literature DB >> 12069615

Molecular dynamics simulations of biomolecules.

Martin Karplus.   

Abstract

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Year:  2002        PMID： 12069615     DOI： 10.1021/ar020082r

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN： 0001-4842            Impact factor:   22.384


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  49 in total

1.  Electronic continuum model for molecular dynamics simulations of biological molecules.

Authors:  I V Leontyev; A A Stuchebrukhov
Journal:  J Chem Theory Comput       Date:  2010       Impact factor: 6.006

2.  Energetics of ion conduction through the gramicidin channel.

Authors:  Toby W Allen; Olaf S Andersen; Benoît Roux
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-22       Impact factor: 11.205

3.  DSMM: a Database of Simulated Molecular Motions.

Authors:  Giacomo Finocchiaro; Ting Wang; Rene Hoffmann; Aitor Gonzalez; Rebecca C Wade
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

4.  How an enzyme surmounts the activation energy barrier.

Authors:  Richard L Schowen
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-06       Impact factor: 11.205

Review 5.  On the path to uncover the bacterial type II secretion system.

Authors:  Badreddine Douzi; Alain Filloux; Romé Voulhoux
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-04-19       Impact factor: 6.237

6.  Association thermodynamics and conformational stability of beta-sheet amyloid beta(17-42) oligomers: effects of E22Q (Dutch) mutation and charge neutralization.

Authors:  Nikolay Blinov; Lyudmyla Dorosh; David Wishart; Andriy Kovalenko
Journal:  Biophys J       Date:  2010-01-20       Impact factor: 4.033

7.  Interfacial tryptophan residues: a role for the cation-pi effect?

Authors:  Frederic N R Petersen; Morten Ø Jensen; Claus H Nielsen
Journal:  Biophys J       Date:  2005-09-08       Impact factor: 4.033

8.  Ion permeation through a narrow channel: using gramicidin to ascertain all-atom molecular dynamics potential of mean force methodology and biomolecular force fields.

Authors:  Toby W Allen; Olaf S Andersen; Benoit Roux
Journal:  Biophys J       Date:  2006-02-24       Impact factor: 4.033

9.  The change of protein intradomain mobility on ligand binding: is it a commonly observed phenomenon?

Authors:  Semen O Yesylevskyy; Valery N Kharkyanen; Alexander P Demchenko
Journal:  Biophys J       Date:  2006-07-28       Impact factor: 4.033

10.  Catalyzed decomposition of urea. Molecular dynamics simulations of the binding of urea to urease.

Authors:  Guillermina Estiu; Kenneth M Merz
Journal:  Biochemistry       Date:  2006-04-11       Impact factor: 3.162
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