Literature DB >> 15754055

Efficient assignment of methyl resonances: enhanced sensitivity by gradient selection in a DE-MQ-(H)CC(m)Ht (m)-TOCSY experiment.

Perttu Permi1, Helena Tossavainen, Maarit Hellman.   

Abstract

We present a gradient selected and doubly sensitivity-enhanced DE-MQ-(H)CC(m)H(m)-TOCSY experiment for the sequence-specific assignment of methyl resonances in (13)C,(15)N labeled proteins. The proposed experiment provides improved sensitivity and artifact suppression relative to the phase-cycled experiments. One part of the (13)Cchemical shift evolution takes place under heteronuclear multiple quantum coherence, whereas the other part occurs under (13)C single quantum coherence in a semi-constant time fashion. The feasibility of the experiment was assessed using (15)N,(13)C labeled Mus musculus coactosin (16 kDa), having a rotational correlation time of 14.5 ns at 15 degrees C in D(2)O. A 16-h experiment on 600 MHz (1)H yielded good quality data and enabled the assignment of 70 out of 72 methyl groups in coactosin. As well as being an improved approach for methyl resonance assignment, this experiment can also be highly valuable for the rapid assignment of methyl resonances in SAR by NMR studies.

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Year:  2004        PMID: 15754055     DOI: 10.1007/s10858-004-3222-2

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  18 in total

1.  Semi-constant-time HMSQC (SCT-HMSQC-HA) for the measurement of (3)J(H(N))(H(alpha)) couplings in (15)N-labeled proteins.

Authors:  H Aitio; P Permi
Journal:  J Magn Reson       Date:  2000-04       Impact factor: 2.229

2.  Efficient side-chain and backbone assignment in large proteins: application to tGCN5.

Authors:  Y Lin; G Wagner
Journal:  J Biomol NMR       Date:  1999-11       Impact factor: 2.835

3.  Ile, Leu, and Val methyl assignments of the 723-residue malate synthase G using a new labeling strategy and novel NMR methods.

Authors:  Vitali Tugarinov; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2003-11-12       Impact factor: 15.419

4.  (1)H, (13)C and (15)N resonance assignments of coactosin, a cytoskeletal regulatory protein.

Authors:  Maarit Hellman; Ville Paavilainen; Arto Annila; Pekka Lappalainen; Perttu Permi
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

5.  Gradient- and sensitivity-enhanced TOCSY experiments.

Authors:  K E Kövér; D Uhrín; V J Hruby
Journal:  J Magn Reson       Date:  1998-02       Impact factor: 2.229

6.  Discovering high-affinity ligands for proteins.

Authors:  P J Hajduk; R P Meadows; S W Fesik
Journal:  Science       Date:  1997-10-17       Impact factor: 47.728

7.  A robust and cost-effective method for the production of Val, Leu, Ile (delta 1) methyl-protonated 15N-, 13C-, 2H-labeled proteins.

Authors:  N K Goto; K H Gardner; G A Mueller; R C Willis; L E Kay
Journal:  J Biomol NMR       Date:  1999-04       Impact factor: 2.835

8.  Intraresidual HNCA: an experiment for correlating only intraresidual backbone resonances.

Authors:  Perttu Permi
Journal:  J Biomol NMR       Date:  2002-07       Impact factor: 2.835

9.  Amino acid type determination in the sequential assignment procedure of uniformly 13C/15N-enriched proteins.

Authors:  S Grzesiek; A Bax
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

10.  A general method for assigning NMR spectra of denatured proteins using 3D HC(CO)NH-TOCSY triple resonance experiments.

Authors:  T M Logan; E T Olejniczak; R X Xu; S W Fesik
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

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  6 in total

1.  Protein-ligand structure guided by backbone and side-chain proton chemical shift perturbations.

Authors:  Clémentine Aguirre; Tim ten Brink; Olivier Cala; Jean-François Guichou; Isabelle Krimm
Journal:  J Biomol NMR       Date:  2014-09-26       Impact factor: 2.835

2.  Towards unambiguous assignment of methyl-containing residues by double and triple sensitivity-enhanced HCCmHm-TOCSY experiments.

Authors:  Peter Würtz; Maarit Hellman; Helena Tossavainen; Perttu Permi
Journal:  J Biomol NMR       Date:  2006-09-09       Impact factor: 2.835

3.  Structural studies reveal an important role for the pleiotrophin C-terminus in mediating interactions with chondroitin sulfate.

Authors:  Eathen Ryan; Di Shen; Xu Wang
Journal:  FEBS J       Date:  2016-03-06       Impact factor: 5.542

4.  Structure and membrane interaction of myristoylated ARF1.

Authors:  Yizhou Liu; Richard A Kahn; James H Prestegard
Journal:  Structure       Date:  2009-01-14       Impact factor: 5.006

5.  Protein flexibility and conformational entropy in ligand design targeting the carbohydrate recognition domain of galectin-3.

Authors:  Carl Diehl; Olof Engström; Tamara Delaine; Maria Håkansson; Samuel Genheden; Kristofer Modig; Hakon Leffler; Ulf Ryde; Ulf J Nilsson; Mikael Akke
Journal:  J Am Chem Soc       Date:  2010-10-20       Impact factor: 15.419

6.  Dynamic structure of membrane-anchored Arf*GTP.

Authors:  Yizhou Liu; Richard A Kahn; James H Prestegard
Journal:  Nat Struct Mol Biol       Date:  2010-07-04       Impact factor: 15.369

  6 in total

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