Literature DB >> 11790836

Crystal structure of the collagen triple helix model [(Pro-Pro-Gly)(10)](3).

Rita Berisio1, Luigi Vitagliano, Lelio Mazzarella, Adriana Zagari.   

Abstract

The first report of the full-length structure of the collagen-like polypeptide [(Pro-Pro-Gly)(10)](3) is given. This structure was obtained from crystals grown in a microgravity environment, which diffracted up to 1.3 A, using synchrotron radiation. The final model, which was refined to an R(factor) of 0.18, is the highest-resolution description of a collagen triple helix reported to date. This structure provides clues regarding a series of aspects related to collagen triple helix structure and assembly. The strict dependence of proline puckering on the position inside the Pro-Pro-Gly triplets and the correlation between backbone and side chain dihedral angles support the propensity-based mechanism of triple helix stabilization/destabilization induced by hydroxyproline. Furthermore, the analysis of [(Pro-Pro-Gly)(10)](3) packing, which is governed by electrostatic interactions, suggests that charges may act as locking features in the axial organization of triple helices in the collagen fibrils.

Entities:  

Mesh:

Substances:

Year:  2002        PMID: 11790836      PMCID: PMC2373432          DOI: 10.1110/ps.32602

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  36 in total

1.  Conformational stability of collagen relies on a stereoelectronic effect.

Authors:  L E Bretscher; C L Jenkins; K M Taylor; M L DeRider; R T Raines
Journal:  J Am Chem Soc       Date:  2001-01-31       Impact factor: 15.419

2.  Analysis of structural design features in collagen.

Authors:  E Y Jones; A Miller
Journal:  J Mol Biol       Date:  1991-03-05       Impact factor: 5.469

3.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

Authors:  A Nicholls; K A Sharp; B Honig
Journal:  Proteins       Date:  1991

4.  SHELXL: high-resolution refinement.

Authors:  G M Sheldrick; T R Schneider
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

5.  Crystal and molecular structure of a collagen-like peptide at 1.9 A resolution.

Authors:  J Bella; M Eaton; B Brodsky; H M Berman
Journal:  Science       Date:  1994-10-07       Impact factor: 47.728

6.  Crystal structure analysis of collagen model peptide (Pro-pro-Gly)10.

Authors:  V Nagarajan; S Kamitori; K Okuyama
Journal:  J Biochem       Date:  1998-12-01       Impact factor: 3.387

7.  X-ray crystallographic determination of a collagen-like peptide with the repeating sequence (Pro-Pro-Gly).

Authors:  R Z Kramer; L Vitagliano; J Bella; R Berisio; L Mazzarella; B Brodsky; A Zagari; H M Berman
Journal:  J Mol Biol       Date:  1998-07-24       Impact factor: 5.469

8.  Hydration structure of a collagen peptide.

Authors:  J Bella; B Brodsky; H M Berman
Journal:  Structure       Date:  1995-09-15       Impact factor: 5.006

Review 9.  Gly-X-Y tripeptide frequencies in collagen: a context for host-guest triple-helical peptides.

Authors:  J A Ramshaw; N K Shah; B Brodsky
Journal:  J Struct Biol       Date:  1998       Impact factor: 2.867

10.  Polymers of tripeptides as collagen models. IV. Structure analysis of poly(L-proly-glycyl-L-proline).

Authors:  A Yonath; W Traub
Journal:  J Mol Biol       Date:  1969-08-14       Impact factor: 5.469

View more
  40 in total

1.  A statistically derived parameterization for the collagen triple-helix.

Authors:  Jan K Rainey; M Cynthia Goh
Journal:  Protein Sci       Date:  2002-11       Impact factor: 6.725

2.  Probing myosin structural conformation in vivo by second-harmonic generation microscopy.

Authors:  V Nucciotti; C Stringari; L Sacconi; F Vanzi; L Fusi; M Linari; G Piazzesi; V Lombardi; F S Pavone
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-12       Impact factor: 11.205

3.  FTIR studies of collagen model peptides: complementary experimental and simulation approaches to conformation and unfolding.

Authors:  Michael A Bryan; Joseph W Brauner; Gloria Anderle; Carol R Flach; Barbara Brodsky; Richard Mendelsohn
Journal:  J Am Chem Soc       Date:  2007-06-06       Impact factor: 15.419

4.  Unidirectional binding of clostridial collagenase to triple helical substrates.

Authors:  Sagaya Theresa Leena Philominathan; Takaki Koide; Kentaro Hamada; Hiroyuki Yasui; Soenke Seifert; Osamu Matsushita; Joshua Sakon
Journal:  J Biol Chem       Date:  2009-02-10       Impact factor: 5.157

5.  The crystal structure of the streptococcal collagen-like protein 2 globular domain from invasive M3-type group A Streptococcus shows significant similarity to immunomodulatory HIV protein gp41.

Authors:  Flavia Squeglia; Beth Bachert; Alfonso De Simone; Slawomir Lukomski; Rita Berisio
Journal:  J Biol Chem       Date:  2013-12-19       Impact factor: 5.157

6.  Computational design of self-assembling register-specific collagen heterotrimers.

Authors:  Jorge A Fallas; Jeffrey D Hartgerink
Journal:  Nat Commun       Date:  2012       Impact factor: 14.919

7.  Stereoelectronic and steric effects in side chains preorganize a protein main chain.

Authors:  Matthew D Shoulders; Kenneth A Satyshur; Katrina T Forest; Ronald T Raines
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-31       Impact factor: 11.205

8.  Solution structure of an ABC collagen heterotrimer reveals a single-register helix stabilized by electrostatic interactions.

Authors:  Jorge A Fallas; Varun Gauba; Jeffrey D Hartgerink
Journal:  J Biol Chem       Date:  2009-07-22       Impact factor: 5.157

9.  Self-assembly of left- and right-handed molecular screws.

Authors:  Fei Xu; I John Khan; Kenneth McGuinness; Avanish S Parmar; Teresita Silva; N Sanjeeva Murthy; Vikas Nanda
Journal:  J Am Chem Soc       Date:  2013-12-03       Impact factor: 15.419

10.  Theoretical study of the NLO responses of some natural and unnatural amino acids used as probe molecules.

Authors:  S N Derrar; M Sekkal-Rahal; P Derreumaux; M Springborg
Journal:  J Mol Model       Date:  2014-08-05       Impact factor: 1.810

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.