Literature DB >> 9677293

X-ray crystallographic determination of a collagen-like peptide with the repeating sequence (Pro-Pro-Gly).

R Z Kramer1, L Vitagliano, J Bella, R Berisio, L Mazzarella, B Brodsky, A Zagari, H M Berman.   

Abstract

The crystal structure of the triple-helical peptide (Pro-Pro-Gly)10 has been re-determined to obtain a more accurate description for this widely studied collagen model and to provide a comparison with the recent high-resolution crystal structure of a collagen-like peptide containing Pro-Hyp-Gly regions. This structure demonstrated that hydroxyproline participates extensively in a repetitive hydrogen-bonded assembly between the peptide and the solvent molecules. Two separate structural studies of the peptide (Pro-Pro-Gly)10 were performed with different crystallization conditions, data collection temperatures, and X-ray sources. The polymer-like structure of one triple-helical repeat of Pro-Pro-Gly has been determined to 2.0 A resolution in one case and 1.7 A resolution in the other. The solvent structures of the two peptides were independently determined specifically for validation purposes. The two structures display a reverse chain trace compared with the original structure determination. In comparison with the Hyp-containing peptide, the two Pro-Pro-Gly structures demonstrate very similar molecular conformation and analogous hydration patterns involving carbonyl groups, but have different crystal packing. This difference in crystal packing indicates that the involvement of hydroxyproline in an extended hydration network is critical for the lateral assembly and supermolecular structure of collagen. Copyright 1998 Academic Press.

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Year:  1998        PMID: 9677293     DOI: 10.1006/jmbi.1998.1881

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  14 in total

1.  Thermal stability of collagen fibers in ethylene glycol.

Authors:  C A Miles; T V Burjanadze
Journal:  Biophys J       Date:  2001-03       Impact factor: 4.033

2.  A statistically derived parameterization for the collagen triple-helix.

Authors:  Jan K Rainey; M Cynthia Goh
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3.  The polyproline II conformation in short alanine peptides is noncooperative.

Authors:  Kang Chen; Zhigang Liu; Neville R Kallenbach
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-15       Impact factor: 11.205

4.  Self-assembly of synthetic collagen triple helices.

Authors:  Frank W Kotch; Ronald T Raines
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-17       Impact factor: 11.205

5.  Application of the PM6 method to modeling proteins.

Authors:  James J P Stewart
Journal:  J Mol Model       Date:  2008-12-10       Impact factor: 1.810

6.  Stereoelectronic and steric effects in side chains preorganize a protein main chain.

Authors:  Matthew D Shoulders; Kenneth A Satyshur; Katrina T Forest; Ronald T Raines
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-31       Impact factor: 11.205

7.  Crystal structure of the collagen triple helix model [(Pro-Pro-Gly)(10)](3).

Authors:  Rita Berisio; Luigi Vitagliano; Lelio Mazzarella; Adriana Zagari
Journal:  Protein Sci       Date:  2002-02       Impact factor: 6.725

Review 8.  Collectin structure: a review.

Authors:  K Håkansson; K B Reid
Journal:  Protein Sci       Date:  2000-09       Impact factor: 6.725

9.  Kinetics of a collagen-like polypeptide fragmentation after mid-IR free-electron laser ablation.

Authors:  Andrey Zavalin; David L Hachey; Munirathinam Sundaramoorthy; Surajit Banerjee; Steven Morgan; Leonard Feldman; Norman Tolk; David W Piston
Journal:  Biophys J       Date:  2008-04-25       Impact factor: 4.033

10.  The Yersinia adhesin YadA binds to a collagenous triple-helical conformation but without sequence specificity.

Authors:  Jack C Leo; Heli Elovaara; Barbara Brodsky; Mikael Skurnik; Adrian Goldman
Journal:  Protein Eng Des Sel       Date:  2008-05-07       Impact factor: 1.650

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