Literature DB >> 19625247

Solution structure of an ABC collagen heterotrimer reveals a single-register helix stabilized by electrostatic interactions.

Jorge A Fallas1, Varun Gauba, Jeffrey D Hartgerink.   

Abstract

Collagen, known for its structural role in tissues and also for its participation in the regulation of homeostatic and pathological processes in mammals, is assembled from triple helices that can be either homotrimers or heterotrimers. High resolution structural information for natural collagens has been difficult to obtain because of their size and the heterogeneity of their native environment. For this reason, peptides that self-assemble into collagen-like triple helices are used to gain insight into the structure, stability, and biochemistry of this important protein family. Although many of the most common collagens in humans are heterotrimers, almost all studies of collagen helices have been on homotrimers. Here we report the first structure of a collagen heterotrimer. Our structure, obtained by solution NMR, highlights the role of electrostatic interactions as stabilizing factors within the triple helical folding motif. This addresses an issue that has been actively researched because of the predominance of charged residues in the collagen family. We also find that it is possible to selectively form a collagen heterotrimer with a well defined composition and register of the peptide chains within the helix, based on information encoded solely in the collagenous domain. Globular domains are implicated in determining the composition of several collagen types, but it is unclear what their role in controlling register may be. We show that is possible to design peptides that not only selectively choose a composition but also a specific register without the assistance of other protein constructs. This mechanism may be used in nature as well.

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Year:  2009        PMID: 19625247      PMCID: PMC2785373          DOI: 10.1074/jbc.M109.014753

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  41 in total

1.  Rapid synthesis of a register-specific heterotrimeric type I collagen helix encompassing the integrin alpha2beta1 binding site.

Authors:  David A Slatter; Loraine A Foley; Anthony R Peachey; Daniel Nietlispach; Richard W Farndale
Journal:  J Mol Biol       Date:  2006-03-15       Impact factor: 5.469

2.  Prediction of collagen stability from amino acid sequence.

Authors:  Anton V Persikov; John A M Ramshaw; Barbara Brodsky
Journal:  J Biol Chem       Date:  2005-03-07       Impact factor: 5.157

3.  The Amber biomolecular simulation programs.

Authors:  David A Case; Thomas E Cheatham; Tom Darden; Holger Gohlke; Ray Luo; Kenneth M Merz; Alexey Onufriev; Carlos Simmerling; Bing Wang; Robert J Woods
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

4.  Structure analysis of a collagen-model peptide with a (Pro-Hyp-Gly) sequence repeat.

Authors:  V Nagarajan; S Kamitori; K Okuyama
Journal:  J Biochem       Date:  1999-02       Impact factor: 3.387

5.  Crystal structure of human type III collagen Gly991-Gly1032 cystine knot-containing peptide shows both 7/2 and 10/3 triple helical symmetries.

Authors:  Sergei P Boudko; Jürgen Engel; Kenji Okuyama; Kazunori Mizuno; Hans Peter Bächinger; Maria A Schumacher
Journal:  J Biol Chem       Date:  2008-09-19       Impact factor: 5.157

6.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

7.  A new set of molecular mechanics parameters for hydroxyproline and its use in molecular dynamics simulations of collagen-like peptides.

Authors:  Sanghyun Park; Randall J Radmer; Teri E Klein; Vijay S Pande
Journal:  J Comput Chem       Date:  2005-11-30       Impact factor: 3.376

8.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  Electrostatic interactions involving lysine make major contributions to collagen triple-helix stability.

Authors:  Anton V Persikov; John A M Ramshaw; Alan Kirkpatrick; Barbara Brodsky
Journal:  Biochemistry       Date:  2005-02-08       Impact factor: 3.162

10.  The CCPN data model for NMR spectroscopy: development of a software pipeline.

Authors:  Wim F Vranken; Wayne Boucher; Tim J Stevens; Rasmus H Fogh; Anne Pajon; Miguel Llinas; Eldon L Ulrich; John L Markley; John Ionides; Ernest D Laue
Journal:  Proteins       Date:  2005-06-01
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  24 in total

1.  Structural insights into charge pair interactions in triple helical collagen-like proteins.

Authors:  Jorge A Fallas; Jinhui Dong; Yizhi J Tao; Jeffrey D Hartgerink
Journal:  J Biol Chem       Date:  2011-12-17       Impact factor: 5.157

2.  Multi-hierarchical self-assembly of a collagen mimetic peptide from triple helix to nanofibre and hydrogel.

Authors:  Lesley E R O'Leary; Jorge A Fallas; Erica L Bakota; Marci K Kang; Jeffrey D Hartgerink
Journal:  Nat Chem       Date:  2011-08-28       Impact factor: 24.427

3.  The role of cross-chain ionic interactions for the stability of collagen model peptides.

Authors:  Neelam Keshwani; Shounak Banerjee; Barbara Brodsky; George I Makhatadze
Journal:  Biophys J       Date:  2013-10-01       Impact factor: 4.033

4.  Computational design of self-assembling register-specific collagen heterotrimers.

Authors:  Jorge A Fallas; Jeffrey D Hartgerink
Journal:  Nat Commun       Date:  2012       Impact factor: 14.919

Review 5.  The collagen family.

Authors:  Sylvie Ricard-Blum
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-01-01       Impact factor: 10.005

Review 6.  Searching for the Pareto frontier in multi-objective protein design.

Authors:  Vikas Nanda; Sandeep V Belure; Ofer M Shir
Journal:  Biophys Rev       Date:  2017-08-10

7.  The NC2 domain of type IX collagen determines the chain register of the triple helix.

Authors:  Sergei P Boudko; Hans Peter Bächinger
Journal:  J Biol Chem       Date:  2012-11-06       Impact factor: 5.157

Review 8.  Rational design of fiber forming supramolecular structures.

Authors:  Vivek A Kumar; Benjamin K Wang; Satoko M Kanahara
Journal:  Exp Biol Med (Maywood)       Date:  2016-03-27

9.  Self-Assembly for the Synthesis of Functional Biomaterials.

Authors:  Nicholas Stephanopoulos; Julia H Ortony; Samuel I Stupp
Journal:  Acta Mater       Date:  2013-02-01       Impact factor: 8.203

10.  Selective assembly of a high stability AAB collagen heterotrimer.

Authors:  Lesley E Russell; Jorge A Fallas; Jeffrey D Hartgerink
Journal:  J Am Chem Soc       Date:  2010-03-17       Impact factor: 15.419

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