Literature DB >> 11734642

Fast dynamics of halophilic malate dehydrogenase and BSA measured by neutron scattering under various solvent conditions influencing protein stability.

M Tehei1, D Madern, C Pfister, G Zaccai.   

Abstract

Protein thermal dynamics was evaluated by neutron scattering for halophilic malate dehydrogenase from Haloarcula marismortui (HmMalDH) and BSA under different solvent conditions. As a measure of thermal stability in each case, loss of secondary structure temperatures were determined by CD. HmMalDH requires molar salt and has different stability behavior in H(2)O, D(2)O, and in NaCl and KCl solvents. BSA remains soluble in molar NaCl. The neutron experiments provided values of mean-squared atomic fluctuations at the 0.1 ns time scale. Effective force constants, characterizing the mean resilience of the protein structure, were calculated from the variation of the mean-squared fluctuation with temperature. For HmMalDH, resilience increased progressively with increasing stability, from molar NaCl in H(2)O, via molar KCl in D(2)O, to molar NaCl in D(2)O. Surprisingly, however, the opposite was observed for BSA; its resilience is higher in H(2)O where it is less stable than in D(2)O. These results confirmed the complexity of dynamics-stability relationships in different proteins. Softer dynamics for BSA in D(2)O showed that the higher thermostability is associated with entropic fluctuations. In the halophilic protein, higher stability is associated with increased resilience showing the dominance of enthalpic terms arising from bonded interactions. From previous data, it is suggested that these are associated with hydrated ion binding stabilizing the protein in the high-salt solvent.

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Year:  2001        PMID: 11734642      PMCID: PMC64686          DOI: 10.1073/pnas.251537298

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

1.  Insights into the molecular relationships between malate and lactate dehydrogenases: structural and biochemical properties of monomeric and dimeric intermediates of a mutant of tetrameric L-[LDH-like] malate dehydrogenase from the halophilic archaeon Haloarcula marismortui.

Authors:  D Madern; C Ebel; M Mevarech; S B Richard; C Pfister; G Zaccai
Journal:  Biochemistry       Date:  2000-02-08       Impact factor: 3.162

Review 2.  How soft is a protein? A protein dynamics force constant measured by neutron scattering.

Authors:  G Zaccai
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Review 3.  Halophilic adaptation of enzymes.

Authors:  D Madern; C Ebel; G Zaccai
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4.  A view of dynamics changes in the molten globule-native folding step by quasielastic neutron scattering.

Authors:  Z Bu; D A Neumann; S H Lee; C M Brown; D M Engelman; C C Han
Journal:  J Mol Biol       Date:  2000-08-11       Impact factor: 5.469

5.  Microscopic origins of entropy, heat capacity and the glass transition in proteins.

Authors:  A L Lee; A J Wand
Journal:  Nature       Date:  2001-05-24       Impact factor: 49.962

6.  Structural equilibrium fluctuations in mesophilic and thermophilic alpha-amylase.

Authors:  J Fitter; J Heberle
Journal:  Biophys J       Date:  2000-09       Impact factor: 4.033

7.  Dynamics of different functional parts of bacteriorhodopsin: H-2H labeling and neutron scattering.

Authors:  V Réat; H Patzelt; M Ferrand; C Pfister; D Oesterhelt; G Zaccai
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-28       Impact factor: 11.205

Review 8.  Serum albumin.

Authors:  T Peters
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9.  Charge density-dependent strength of hydration and biological structure.

Authors:  K D Collins
Journal:  Biophys J       Date:  1997-01       Impact factor: 4.033

10.  Stability against denaturation mechanisms in halophilic malate dehydrogenase "adapt" to solvent conditions.

Authors:  F Bonneté; D Madern; G Zaccaï
Journal:  J Mol Biol       Date:  1994-12-09       Impact factor: 5.469

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  36 in total

1.  Dynamic transition associated with the thermal denaturation of a small Beta protein.

Authors:  Daniela Russo; Javier Pérez; Jean-Marc Zanotti; Michel Desmadril; Dominique Durand
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

2.  Picosecond internal dynamics of lysozyme as affected by thermal unfolding in nonaqueous environment.

Authors:  A De Francesco; M Marconi; S Cinelli; G Onori; A Paciaroni
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

3.  Adaptation to extreme environments: macromolecular dynamics in bacteria compared in vivo by neutron scattering.

Authors:  Moeava Tehei; Bruno Franzetti; Dominique Madern; Margaret Ginzburg; Ben Z Ginzburg; Marie-Thérèse Giudici-Orticoni; Mireille Bruschi; Giuseppe Zaccai
Journal:  EMBO Rep       Date:  2004-01       Impact factor: 8.807

4.  Detection of ligand- and solvent-induced shape alterations of cell-growth-regulatory human lectin galectin-1 in solution by small angle neutron and x-ray scattering.

Authors:  Lizhong He; Sabine André; Hans-Christian Siebert; Heike Helmholz; Bernd Niemeyer; Hans-Joachim Gabius
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

5.  Molecular dynamics decomposition of temperature-dependent elastic neutron scattering by a protein solution.

Authors:  Jennifer A Hayward; John L Finney; Roy M Daniel; Jeremy C Smith
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

6.  Effect of the environment on the protein dynamical transition: a neutron scattering study.

Authors:  Alessandro Paciaroni; Stefania Cinelli; Giuseppe Onori
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

7.  The influence of solvent composition on global dynamics of human butyrylcholinesterase powders: a neutron-scattering study.

Authors:  F Gabel; M Weik; B P Doctor; A Saxena; D Fournier; L Brochier; F Renault; P Masson; I Silman; G Zaccai
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

8.  Protein dynamics in solution and powder measured by incoherent elastic neutron scattering: the influence of Q-range and energy resolution.

Authors:  Frank Gabel
Journal:  Eur Biophys J       Date:  2004-09-16       Impact factor: 1.733

9.  Crowding induces differences in the diffusion of thermophilic and mesophilic proteins: a new look at neutron scattering results.

Authors:  Enrique Marcos; Pau Mestres; Ramon Crehuet
Journal:  Biophys J       Date:  2011-12-07       Impact factor: 4.033

10.  Dynamics-stability relationships in apo- and holomyoglobin: a combined neutron scattering and molecular dynamics simulations study.

Authors:  Andreas Maximilian Stadler; Eric Pellegrini; Mark Johnson; Jörg Fitter; Giuseppe Zaccai
Journal:  Biophys J       Date:  2012-01-18       Impact factor: 4.033

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