Literature DB >> 22261067

Crowding induces differences in the diffusion of thermophilic and mesophilic proteins: a new look at neutron scattering results.

Enrique Marcos1, Pau Mestres, Ramon Crehuet.   

Abstract

The dynamical basis underlying the increased thermal stability of thermophilic proteins remains uncertain. Here, we challenge the new paradigm established by neutron scattering experiments in solution, in which the adaptation of thermophilic proteins to high temperatures lies in the lower sensitivity of their flexibility to temperature changes. By means of a combination of molecular dynamics and Brownian dynamics simulations, we report a reinterpretation of those experiments and show evidence that under crowding conditions, such as in vivo, thermophilic and homolog mesophilic proteins have diffusional properties with different thermal behavior.
Copyright © 2011 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 22261067      PMCID: PMC3297780          DOI: 10.1016/j.bpj.2011.09.033

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  57 in total

Review 1.  How soft is a protein? A protein dynamics force constant measured by neutron scattering.

Authors:  G Zaccai
Journal:  Science       Date:  2000-06-02       Impact factor: 47.728

2.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

3.  Biomolecular hydration: from water dynamics to hydrodynamics.

Authors:  Bertil Halle; Monika Davidovic
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-03       Impact factor: 11.205

4.  Protein dynamics in solution and powder measured by incoherent elastic neutron scattering: the influence of Q-range and energy resolution.

Authors:  Frank Gabel
Journal:  Eur Biophys J       Date:  2004-09-16       Impact factor: 1.733

5.  Molecular simulations suggest protein salt bridges are uniquely suited to life at high temperatures.

Authors:  Andrew S Thomas; Adrian H Elcock
Journal:  J Am Chem Soc       Date:  2004-02-25       Impact factor: 15.419

6.  Explanation of the stability of thermophilic proteins based on unique micromorphology.

Authors:  Simone Melchionna; Raffaele Sinibaldi; Giuseppe Briganti
Journal:  Biophys J       Date:  2006-03-13       Impact factor: 4.033

7.  Dynamic arrangement of ion pairs and individual contributions to the thermal stability of the cofactor-binding domain of glutamate dehydrogenase from Thermotoga maritima.

Authors:  Cristian Danciulescu; Rudolf Ladenstein; Lennart Nilsson
Journal:  Biochemistry       Date:  2007-06-29       Impact factor: 3.162

8.  Key role of proximal water in regulating thermostable proteins.

Authors:  Fabio Sterpone; Claudia Bertonati; Giuseppe Briganti; Simone Melchionna
Journal:  J Phys Chem B       Date:  2009-01-08       Impact factor: 2.991

9.  Dynamical heterogeneity of specific amino acids in bacteriorhodopsin.

Authors:  K Wood; S Grudinin; B Kessler; M Weik; M Johnson; G R Kneller; D Oesterhelt; G Zaccai
Journal:  J Mol Biol       Date:  2008-05-11       Impact factor: 5.469

10.  Neutron scattering reveals the dynamic basis of protein adaptation to extreme temperature.

Authors:  Moeava Tehei; Dominique Madern; Bruno Franzetti; Giuseppe Zaccai
Journal:  J Biol Chem       Date:  2005-10-03       Impact factor: 5.157

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  2 in total

1.  Hot and crowded: new insights into the dynamics of thermophilic enzymes from multiscale modeling.

Authors:  Matthias Heyden; Douglas J Tobias
Journal:  Biophys J       Date:  2011-12-07       Impact factor: 4.033

2.  How conformational flexibility stabilizes the hyperthermophilic elongation factor G-domain.

Authors:  Maria Kalimeri; Obaidur Rahaman; Simone Melchionna; Fabio Sterpone
Journal:  J Phys Chem B       Date:  2013-10-24       Impact factor: 2.991

  2 in total

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