Literature DB >> 12629206

Mechanics of DNA packaging in viruses.

Prashant K Purohit1, Jané Kondev, Rob Phillips.   

Abstract

A new generation of single-molecule experiments has opened up the possibility of reexamining many of the fundamental processes of biochemistry and molecular biology from a unique and quantitative perspective. One technique producing a host of intriguing results is the use of optical tweezers to measure the mechanical forces exerted by molecular motors during key processes such as the transcription of DNA or the packing of a viral genome into its capsid. The objective of the current article is to respond to such measurements on viruses and to use the theory of elasticity and a simple model of charge and hydration forces to derive the force required to pack DNA into a viral capsid as a function of the fraction of the viral genome that has been packed. The results are found to be in excellent accord with recent measurements and complement previous theoretical work. Because the packing of DNA in viral capsids occurs under circumstances of high internal pressure, we also compute how much pressure a capsid can sustain without rupture.

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Year:  2003        PMID: 12629206      PMCID: PMC404299          DOI: 10.1073/pnas.0737893100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

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Authors:  T S Baker; N H Olson; S D Fuller
Journal:  Microbiol Mol Biol Rev       Date:  1999-12       Impact factor: 11.056

2.  Structure of the bacteriophage phi29 DNA packaging motor.

Authors:  A A Simpson; Y Tao; P G Leiman; M O Badasso; Y He; P J Jardine; N H Olson; M C Morais; S Grimes; D L Anderson; T S Baker; M G Rossmann
Journal:  Nature       Date:  2000-12-07       Impact factor: 49.962

Review 3.  Virus assembly: Imaging a molecular machine.

Authors:  W R Wikoff; J E Johnson
Journal:  Curr Biol       Date:  1999-04-22       Impact factor: 10.834

4.  Direct measurement of the intermolecular forces between counterion-condensed DNA double helices. Evidence for long range attractive hydration forces.

Authors:  D C Rau; V A Parsegian
Journal:  Biophys J       Date:  1992-01       Impact factor: 4.033

5.  The structure of isometric capsids of bacteriophage T4.

Authors:  N H Olson; M Gingery; F A Eiserling; T S Baker
Journal:  Virology       Date:  2001-01-20       Impact factor: 3.616

6.  Assembly of a tailed bacterial virus and its genome release studied in three dimensions.

Authors:  Y Tao; N H Olson; W Xu; D L Anderson; M G Rossmann; T S Baker
Journal:  Cell       Date:  1998-10-30       Impact factor: 41.582

7.  Hexagonally packed DNA within bacteriophage T7 stabilized by curvature stress.

Authors:  T Odijk
Journal:  Biophys J       Date:  1998-09       Impact factor: 4.033

8.  Energetics of quasiequivalence: computational analysis of protein-protein interactions in icosahedral viruses.

Authors:  V S Reddy; H A Giesing; R T Morton; A Kumar; C B Post; C L Brooks; J E Johnson
Journal:  Biophys J       Date:  1998-01       Impact factor: 4.033

9.  Osmotic stress for the direct measurement of intermolecular forces.

Authors:  V A Parsegian; R P Rand; N L Fuller; D C Rau
Journal:  Methods Enzymol       Date:  1986       Impact factor: 1.600

10.  Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: hydration forces between parallel DNA double helices.

Authors:  D C Rau; B Lee; V A Parsegian
Journal:  Proc Natl Acad Sci U S A       Date:  1984-05       Impact factor: 11.205

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  85 in total

1.  Osmotic shock and the strength of viral capsids.

Authors:  Amado Cordova; Markus Deserno; William M Gelbart; Avinoam Ben-Shaul
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

2.  Osmotic pressure inhibition of DNA ejection from phage.

Authors:  Alex Evilevitch; Laurence Lavelle; Charles M Knobler; Eric Raspaud; William M Gelbart
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-24       Impact factor: 11.205

3.  Bacteriophage capsids: tough nanoshells with complex elastic properties.

Authors:  I L Ivanovska; P J de Pablo; B Ibarra; G Sgalari; F C MacKintosh; J L Carrascosa; C F Schmidt; G J L Wuite
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-07       Impact factor: 11.205

4.  A coarse-grain three-site-per-nucleotide model for DNA with explicit ions.

Authors:  Gordon S Freeman; Daniel M Hinckley; Juan J de Pablo
Journal:  J Chem Phys       Date:  2011-10-28       Impact factor: 3.488

5.  Ion-dependent dynamics of DNA ejections for bacteriophage lambda.

Authors:  David Wu; David Van Valen; Qicong Hu; Rob Phillips
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

6.  Differential assembly of Hepatitis B Virus core protein on single- and double-stranded nucleic acid suggest the dsDNA-filled core is spring-loaded.

Authors:  Mary S Dhason; Joseph C-Y Wang; Michael F Hagan; Adam Zlotnick
Journal:  Virology       Date:  2012-05-16       Impact factor: 3.616

7.  Forces during bacteriophage DNA packaging and ejection.

Authors:  Prashant K Purohit; Mandar M Inamdar; Paul D Grayson; Todd M Squires; Jané Kondev; Rob Phillips
Journal:  Biophys J       Date:  2004-11-19       Impact factor: 4.033

8.  Measurements of DNA lengths remaining in a viral capsid after osmotically suppressed partial ejection.

Authors:  Alex Evilevitch; James W Gober; Martin Phillips; Charles M Knobler; William M Gelbart
Journal:  Biophys J       Date:  2004-10-15       Impact factor: 4.033

9.  DNA packaging in bacteriophage: is twist important?

Authors:  Andrew James Spakowitz; Zhen-Gang Wang
Journal:  Biophys J       Date:  2005-04-01       Impact factor: 4.033

10.  Visualization of bacteriophage T3 capsids with DNA incompletely packaged in vivo.

Authors:  Ping-An Fang; Elena T Wright; Susan T Weintraub; Kevin Hakala; Weimin Wu; Philip Serwer; Wen Jiang
Journal:  J Mol Biol       Date:  2008-10-14       Impact factor: 5.469

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