Literature DB >> 2956092

Organization of double-stranded DNA in bacteriophages: a study by cryo-electron microscopy of vitrified samples.

J Lepault, J Dubochet, W Baschong, E Kellenberger.   

Abstract

In this paper it is shown that conformation and packing of double-stranded DNA within the head of bacteriophages lambda and T4 can be assessed by cryo-electron microscopy of vitrified specimens. Electron diffraction patterns show that DNA within vitrified bacteriophages has a B conformation. Electron micrographs of vitrified bacteriophages show domains within the head formed by a approximately 2.5-nm striation and arising from the DNA packing. The number of differently oriented domains seen within a vitrified bacteriophage depends upon the geometry of the DNA container: the bacteriophage capsid. The packing of DNA within bacteriophages seems then to be governed by at least two phenomena. The first is the tendency of DNA to form local alignments (nematic liquid crystals). The second is the orientation of these liquid crystals by the bacteriophage capsid. From these observations we propose a possible packaging mechanism: constrained nematic crystallization.

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Year:  1987        PMID: 2956092      PMCID: PMC553958          DOI: 10.1002/j.1460-2075.1987.tb02393.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  24 in total

1.  Kinky helix.

Authors:  F H Crick; A Klug
Journal:  Nature       Date:  1975-06-12       Impact factor: 49.962

2.  Liquid crystalline phases in concentrated aqueous solutions of Na+ DNA.

Authors:  R L Rill
Journal:  Proc Natl Acad Sci U S A       Date:  1986-01       Impact factor: 11.205

Review 3.  Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: the roles of ion association or release, screening, and ion effects on water activity.

Authors:  M T Record; C F Anderson; T M Lohman
Journal:  Q Rev Biophys       Date:  1978-05       Impact factor: 5.318

Review 4.  The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides.

Authors:  G S Manning
Journal:  Q Rev Biophys       Date:  1978-05       Impact factor: 5.318

5.  Bacteriophage lambda derivatives carrying two copies of the cohesive end site.

Authors:  S W Emmons
Journal:  J Mol Biol       Date:  1974-03-15       Impact factor: 5.469

6.  Genetic control of capsid length in bacteriophage T4. I. Isolation and preliminary description of four new mutants.

Authors:  A H Doermann; F A Eiserling; L Boehner
Journal:  J Virol       Date:  1973-08       Impact factor: 5.103

7.  Mode of DNA packing within bacteriophage heads.

Authors:  K E Richards; R C Williams; R Calendar
Journal:  J Mol Biol       Date:  1973-08-05       Impact factor: 5.469

8.  Studies on the morphopoiesis of the head of phage T-even. V. The components of the T4 capsid and of other, capsid-related structures.

Authors:  E Kellenberger
Journal:  Virology       Date:  1968-03       Impact factor: 3.616

9.  Assembly of the head of bacteriophage P22: x-ray diffraction from heads, proheads and related structures.

Authors:  W Earnshaw; S Casjens; S C Harrison
Journal:  J Mol Biol       Date:  1976-06-25       Impact factor: 5.469

10.  DNA arrangement in isometric phage heads.

Authors:  W C Earnshaw; S C Harrison
Journal:  Nature       Date:  1977-08-18       Impact factor: 49.962

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  44 in total

Review 1.  Adding the third dimension to virus life cycles: three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs.

Authors:  T S Baker; N H Olson; S D Fuller
Journal:  Microbiol Mol Biol Rev       Date:  1999-12       Impact factor: 11.056

2.  DNA packaging and ejection forces in bacteriophage.

Authors:  J Kindt; S Tzlil; A Ben-Shaul; W M Gelbart
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-13       Impact factor: 11.205

3.  Knotting probability of DNA molecules confined in restricted volumes: DNA knotting in phage capsids.

Authors:  Javier Arsuaga; Mariel Vázquez; Sonia Trigueros; De Witt Sumners; Joaquim Roca
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

4.  Molecular architecture of the prolate head of bacteriophage T4.

Authors:  Andrei Fokine; Paul R Chipman; Petr G Leiman; Vadim V Mesyanzhinov; Venigalla B Rao; Michael G Rossmann
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-07       Impact factor: 11.205

5.  The three-dimensional structure of frozen-hydrated bacteriophage phi X174.

Authors:  N H Olson; T S Baker; P Willingmann; N L Incardona
Journal:  J Struct Biol       Date:  1992 Mar-Apr       Impact factor: 2.867

6.  DNA packaging in bacteriophage: is twist important?

Authors:  Andrew James Spakowitz; Zhen-Gang Wang
Journal:  Biophys J       Date:  2005-04-01       Impact factor: 4.033

7.  DNA knots reveal a chiral organization of DNA in phage capsids.

Authors:  Javier Arsuaga; Mariel Vazquez; Paul McGuirk; Sonia Trigueros; De Witt Sumners; Joaquim Roca
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-15       Impact factor: 11.205

8.  Langevin dynamics simulations of genome packing in bacteriophage.

Authors:  Christopher Forrey; M Muthukumar
Journal:  Biophys J       Date:  2006-04-14       Impact factor: 4.033

9.  Structural changes of bacteriophage phi29 upon DNA packaging and release.

Authors:  Ye Xiang; Marc C Morais; Anthony J Battisti; Shelley Grimes; Paul J Jardine; Dwight L Anderson; Michael G Rossmann
Journal:  EMBO J       Date:  2006-10-19       Impact factor: 11.598

10.  Structure of the herpes simplex virus capsid: effects of extraction with guanidine hydrochloride and partial reconstitution of extracted capsids.

Authors:  W W Newcomb; J C Brown
Journal:  J Virol       Date:  1991-02       Impact factor: 5.103

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