Literature DB >> 9917381

Native proteins are surface-molten solids: application of the Lindemann criterion for the solid versus liquid state.

Y Zhou1, D Vitkup, M Karplus.   

Abstract

Since the internal motions of proteins play an essential role in their biological function, it is important to characterize them in a fundamental way. The Lindemann criterion for the solid state is applied to molecular dynamics simulations and temperature-dependent X-ray diffraction data of proteins. It is found that the interior of native proteins is solid-like, while their surface is liquid-like. When the entire protein becomes solid-like at low temperature ( approximately 220 K), the protein is inactive. Thus, the surface-molten solid nature of proteins in their native state permits the dynamics required for function, while preserving their stability. Comparison with rare gas clusters and polymer models indicates that their thermodynamic phase diagrams have many elements in common with those of proteins. Copyright 1999 Academic Press.

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Year:  1999        PMID: 9917381     DOI: 10.1006/jmbi.1998.2374

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  44 in total

1.  Anisotropy of fluctuation dynamics of proteins with an elastic network model.

Authors:  A R Atilgan; S R Durell; R L Jernigan; M C Demirel; O Keskin; I Bahar
Journal:  Biophys J       Date:  2001-01       Impact factor: 4.033

2.  Folding thermodynamics of model four-strand antiparallel beta-sheet proteins.

Authors:  Hyunbum Jang; Carol K Hall; Yaoqi Zhou
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

3.  Radially softening diffusive motions in a globular protein.

Authors:  S Dellerue; A J Petrescu; J C Smith; M C Bellissent-Funel
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

4.  On the nature of a glassy state of matter in a hydrated protein: Relation to protein function.

Authors:  M M Teeter; A Yamano; B Stec; U Mohanty
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-25       Impact factor: 11.205

5.  Thermodynamics and stability of a beta-sheet complex: molecular dynamics simulations on simplified off-lattice protein models.

Authors:  Hyunbum Jang; Carol K Hall; Yaoqi Zhou
Journal:  Protein Sci       Date:  2004-01       Impact factor: 6.725

6.  Assembly and kinetic folding pathways of a tetrameric beta-sheet complex: molecular dynamics simulations on simplified off-lattice protein models.

Authors:  Hyunbum Jang; Carol K Hall; Yaoqi Zhou
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

7.  Analysis of the distributed computing approach applied to the folding of a small beta peptide.

Authors:  Emanuele Paci; Andrea Cavalli; Michele Vendruscolo; Amedeo Caflisch
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-18       Impact factor: 11.205

8.  Relaxation kinetics and the glassiness of proteins: the case of bovine pancreatic trypsin inhibitor.

Authors:  Canan Baysal; Ali Rana Atilgan
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

9.  Quantification of helix-helix binding affinities in micelles and lipid bilayers.

Authors:  Andrei L Lomize; I D Pogozheva; H I Mosberg
Journal:  Protein Sci       Date:  2004-08-31       Impact factor: 6.725

10.  Translational-entropy gain of solvent upon protein folding.

Authors:  Yuichi Harano; Masahiro Kinoshita
Journal:  Biophys J       Date:  2005-07-29       Impact factor: 4.033

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