Literature DB >> 17719000

Minimizing frustration by folding in an aqueous environment.

Carla Mattos1, A Clay Clark.   

Abstract

Although life as we know it evolved in an aqueous medium, the properties of water are not completely understood. In this review, we focus on the role of water in guiding protein folding and stability. Specifically, we discuss the mechanisms of protein folding in an aqueous environment, the effects of water on the folding energy landscape as well as the transition state ensemble, and interactions of water with the folded state. We show that water cannot be viewed as a passive solvent, but rather, plays a very active role in the life of a protein.

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Year:  2007        PMID: 17719000      PMCID: PMC2989500          DOI: 10.1016/j.abb.2007.07.007

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  130 in total

1.  Origin of unusual phi-values in protein folding: evidence against specific nucleation sites.

Authors:  Ignacio E Sánchez; Thomas Kiefhaber
Journal:  J Mol Biol       Date:  2003-12-12       Impact factor: 5.469

2.  Organic solvents order the dynamic switch II in Ras crystals.

Authors:  Greg Buhrman; Vesna de Serrano; Carla Mattos
Journal:  Structure       Date:  2003-07       Impact factor: 5.006

3.  Water as a conformational editor in protein folding.

Authors:  Richard B Sessions; Geraint L Thomas; Martin J Parker
Journal:  J Mol Biol       Date:  2004-10-29       Impact factor: 5.469

4.  The dynamics of water-protein interaction studied by ultrafast optical Kerr-effect spectroscopy.

Authors:  Neil T Hunt; Lisa Kattner; Richard P Shanks; Klaas Wynne
Journal:  J Am Chem Soc       Date:  2007-02-23       Impact factor: 15.419

5.  Snapshots of a dynamic folding nucleus in zinc-substituted Pseudomonas aeruginosa azurin.

Authors:  Corey J Wilson; Pernilla Wittung-Stafshede
Journal:  Biochemistry       Date:  2005-08-02       Impact factor: 3.162

Review 6.  Water: now you see it, now you don't.

Authors:  M Levitt; B H Park
Journal:  Structure       Date:  1993-12-15       Impact factor: 5.006

7.  The response of T4 lysozyme to large-to-small substitutions within the core and its relation to the hydrophobic effect.

Authors:  J Xu; W A Baase; E Baldwin; B W Matthews
Journal:  Protein Sci       Date:  1998-01       Impact factor: 6.725

8.  Water structure of a hydrophobic protein at atomic resolution: Pentagon rings of water molecules in crystals of crambin.

Authors:  M M Teeter
Journal:  Proc Natl Acad Sci U S A       Date:  1984-10       Impact factor: 11.205

9.  Unconventional interactions between water and heterocyclic nitrogens in protein structures.

Authors:  Elliott J Stollar; Jose Luis Gelpí; Sameer Velankar; Adel Golovin; Modesto Orozco; Ben F Luisi
Journal:  Proteins       Date:  2004-10-01

10.  Heat capacity effects in protein folding and ligand binding: a re-evaluation of the role of water in biomolecular thermodynamics.

Authors:  Alan Cooper
Journal:  Biophys Chem       Date:  2004-12-24       Impact factor: 2.352

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  3 in total

1.  A stringent test for hydrophobicity scales: two proteins with 88% sequence identity but different structure and function.

Authors:  Alexander E Kister; James C Phillips
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-30       Impact factor: 11.205

2.  The Role of Solvent-Accessible Leu-208 of Cold-Active Pseudomonas fluorescens Strain AMS8 Lipase in Interfacial Activation, Substrate Accessibility and Low-Molecular Weight Esterification in the Presence of Toluene.

Authors:  Norhayati Yaacob; Nor Hafizah Ahmad Kamarudin; Adam Thean Chor Leow; Abu Bakar Salleh; Raja Noor Zaliha Raja Abd Rahman; Mohd Shukuri Mohamad Ali
Journal:  Molecules       Date:  2017-08-12       Impact factor: 4.411

3.  3-O-Sulfation induces sequence-specific compact topologies in heparan sulfate that encode a dynamic sulfation code.

Authors:  Samuel G Holmes; Balaji Nagarajan; Umesh R Desai
Journal:  Comput Struct Biotechnol J       Date:  2022-07-18       Impact factor: 6.155

  3 in total

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