Literature DB >> 22911292

Bayesian signal extraction from noisy FT NMR spectra.

A Rouh1, A Louis-Joseph, J Y Lallemand.   

Abstract

The statistical interpretation of the histogram representation of NMR spectra is described, leading to an estimation of the probability density function of the noise. The white-noise and Gaussian hypotheses are discussed, and a new estimator of the noise standard deviation is derived from the histogram strategy. The Bayesian approach to NMR signal detection is presented. This approach homogeneously combines prior knowledge, obtained from the histogram strategy, together with the posterior information resulting from the test of presence of a set of reference shapes in the neighbourhood of each data point. This scheme leads to a new strategy in the local detection of NMR signals in 2D and 3D spectra, which is illustrated by a complete peak-picking algorithm.

Year:  1994        PMID: 22911292     DOI: 10.1007/BF00156617

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  2 in total

1.  Simulation of NOESY spectra of DNA segments: a new scaling procedure for iterative comparison of calculated and experimental NOE intensities.

Authors:  R Nibedita; R A Kumar; A Majumdar; R V Hosur
Journal:  J Biomol NMR       Date:  1992-09       Impact factor: 2.835

2.  Solution structure of a calmodulin-target peptide complex by multidimensional NMR.

Authors:  M Ikura; G M Clore; A M Gronenborn; G Zhu; C B Klee; A Bax
Journal:  Science       Date:  1992-05-01       Impact factor: 47.728

  2 in total
  11 in total

1.  MUNIN: a new approach to multi-dimensional NMR spectra interpretation.

Authors:  V Y Orekhov; I V Ibraghimov; M Billeter
Journal:  J Biomol NMR       Date:  2001-05       Impact factor: 2.835

Review 2.  Automated structure determination from NMR spectra.

Authors:  Peter Güntert
Journal:  Eur Biophys J       Date:  2008-09-20       Impact factor: 1.733

3.  Automation of peak-tracking analysis of stepwise perturbed NMR spectra.

Authors:  Tommaso Banelli; Marco Vuano; Federico Fogolari; Andrea Fusiello; Gennaro Esposito; Alessandra Corazza
Journal:  J Biomol NMR       Date:  2017-02-17       Impact factor: 2.835

4.  A general Bayesian method for an automated signal class recognition in 2D NMR spectra combined with a multivariate discriminant analysis.

Authors:  C Antz; K P Neidig; H R Kalbitzer
Journal:  J Biomol NMR       Date:  1995-04       Impact factor: 2.835

5.  AURELIA, a program for computer-aided analysis of multidimensional NMR spectra.

Authors:  K P Neidig; M Geyer; A Görler; C Antz; R Saffrich; W Beneicke; H R Kalbitzer
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

6.  WaVPeak: picking NMR peaks through wavelet-based smoothing and volume-based filtering.

Authors:  Zhi Liu; Ahmed Abbas; Bing-Yi Jing; Xin Gao
Journal:  Bioinformatics       Date:  2012-02-10       Impact factor: 6.937

7.  Fundamental and practical aspects of machine learning for the peak picking of biomolecular NMR spectra.

Authors:  Da-Wei Li; Alexandar L Hansen; Lei Bruschweiler-Li; Chunhua Yuan; Rafael Brüschweiler
Journal:  J Biomol NMR       Date:  2022-04-07       Impact factor: 2.582

8.  Median Modified Wiener Filter for nonlinear adaptive spatial denoising of protein NMR multidimensional spectra.

Authors:  Carlo Vittorio Cannistraci; Ahmed Abbas; Xin Gao
Journal:  Sci Rep       Date:  2015-01-26       Impact factor: 4.379

9.  PICKY: a novel SVD-based NMR spectra peak picking method.

Authors:  Babak Alipanahi; Xin Gao; Emre Karakoc; Logan Donaldson; Ming Li
Journal:  Bioinformatics       Date:  2009-06-15       Impact factor: 6.937

10.  Automatic peak selection by a Benjamini-Hochberg-based algorithm.

Authors:  Ahmed Abbas; Xin-Bing Kong; Zhi Liu; Bing-Yi Jing; Xin Gao
Journal:  PLoS One       Date:  2013-01-07       Impact factor: 3.240

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