Literature DB >> 12493828

NMR detection of multiple transitions to low-populated states in azurin.

Dmitry M Korzhnev1, B Göran Karlsson, Vladislav Yu Orekhov, Martin Billeter.   

Abstract

Transitions to conformational states with very low populations were detected for the reduced blue copper protein azurin from Pseudomonas aeruginosa by applying constant relaxation time CPMG measurements to the backbone (15)N nuclei at three magnetic fields (11.7, 14.1, and 18.8 T) and three temperatures (25.7, 35.4, and 44.8 degrees C). Two exchange processes with different rate constants could be discriminated despite populations of the excited states below 1% and spatial neighborhood of the two processes. The group of (15)N nuclei involved in the faster process exhibits at 44.8 degrees C a forward rate constant of 11.7+/-2.4 s(-1) and a population of the exited state of 0.39+/-0.07%. They surround the aromatic ring of histidine 35 whose protonation state is coupled to the flipping of a neighboring peptide plane. For the slower process, the forward rate constant and population of the exited state at 44.8 degrees C are 4.1+/-0.1 s(-1) and 0.45+/-0.02%, respectively. The residues involved cluster nearby the copper ion, which is separated from the protonation site of histidine 35 by about 8 A, indicating conformational rearrangements involving the copper coordinating loops. The dependence of the equilibrium constant on the temperature is consistent with an enthalpy-dominated transition around the copper, but an entropy-controlled transition near histidine 35. The detection by nuclear magnetic resonance of millisecond to second conformational transitions near the copper ion suggests a low energy-cost rearrangement of the copper-binding site that may be necessary for efficient electron transfer.

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Year:  2003        PMID: 12493828      PMCID: PMC2312403          DOI: 10.1110/ps.0225403

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  27 in total

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2.  MUNIN: application of three-way decomposition to the analysis of heteronuclear NMR relaxation data.

Authors:  D M Korzhneva; I V Ibraghimov; M Billeter; V Y Orekhov
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4.  Studying excited states of proteins by NMR spectroscopy.

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Journal:  Nat Struct Biol       Date:  2001-11

5.  Measurement of slow (micros-ms) time scale dynamics in protein side chains by (15)N relaxation dispersion NMR spectroscopy: application to Asn and Gln residues in a cavity mutant of T4 lysozyme.

Authors:  F A Mulder; N R Skrynnikov; B Hon; F W Dahlquist; L E Kay
Journal:  J Am Chem Soc       Date:  2001-02-07       Impact factor: 15.419

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8.  Off-resonance effects in 15N T2 CPMG measurements.

Authors:  D M Korzhnev; E V Tischenko; A S Arseniev
Journal:  J Biomol NMR       Date:  2000-07       Impact factor: 2.835

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Journal:  J Biomol NMR       Date:  2001-12       Impact factor: 2.835

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  10 in total

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Authors:  Dmitry M Korzhnev; Vladislav Yu Orekhov; Frederick W Dahlquist; Lewis E Kay
Journal:  J Biomol NMR       Date:  2003-05       Impact factor: 2.835

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4.  Global structural motions from the strain of a single hydrogen bond.

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5.  Structure and dynamics of pin1 during catalysis by NMR.

Authors:  Wladimir Labeikovsky; Elan Z Eisenmesser; Daryl A Bosco; Dorothee Kern
Journal:  J Mol Biol       Date:  2007-01-24       Impact factor: 5.469

6.  Conformational dynamics and structural plasticity play critical roles in the ubiquitin recognition of a UIM domain.

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7.  Characterizing and controlling the inherent dynamics of cyclophilin-A.

Authors:  Jennifer Schlegel; Geoffrey S Armstrong; Jasmina S Redzic; Fengli Zhang; Elan Zohar Eisenmesser
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8.  Molecular dynamics of a thermostable multicopper oxidase from Thermus thermophilus HB27: structural differences between the apo and holo forms.

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Journal:  PLoS One       Date:  2012-07-10       Impact factor: 3.240

9.  Conserved conformational dynamics determine enzyme activity.

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10.  Removal of slow-pulsing artifacts in in-phase 15N relaxation dispersion experiments using broadband 1H decoupling.

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  10 in total

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