Literature DB >> 11370781

3D H(aro)-NOESY-CH3NH and C(aro)-NOESY-CH3NH experiments for double labeled proteins.

Y Xia1, D Man, G Zhu.   

Abstract

Precision in the determination of the 3D structures of proteins by NMR depends on obtaining an adequate number of NOE restraints. Ambiguity in the assignment of NOE cross peaks between aromatic and other protons is an impediment to high quality structure determination. Two pulse sequences, 3D H(aro)-NOESY-CH3NH and 3D C(aro)-NOESY-CH3NH, based on a modification of a technique for simultaneous detection of 13C-1H (of CH3) and 15N-1H correlations in one measurement, are proposed in the present work. These 3D experiments, which are optimized for resolution in the 13C and 15N dimensions, provide NOE information between aromatic protons and methyl or amide protons. CH2 moieties are filtered out and the CH groups in aromatic rings are selected, allowing their NOE cross peaks to be unambiguously assigned. Unambiguous NOEs connecting aromatic and methyl or amide protons will provide important restraints for protein structure calculations.

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Year:  2001        PMID: 11370781     DOI: 10.1023/a:1011288324900

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  8 in total

Review 1.  Solution NMR spectroscopy beyond 25 kDa.

Authors:  L E Kay; K H Gardner
Journal:  Curr Opin Struct Biol       Date:  1997-10       Impact factor: 6.809

2.  Automated NOESY interpretation with ambiguous distance restraints: the refined NMR solution structure of the pleckstrin homology domain from beta-spectrin.

Authors:  M Nilges; M J Macias; S I O'Donoghue; H Oschkinat
Journal:  J Mol Biol       Date:  1997-06-13       Impact factor: 5.469

3.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

4.  Calculation of protein structures with ambiguous distance restraints. Automated assignment of ambiguous NOE crosspeaks and disulphide connectivities.

Authors:  M Nilges
Journal:  J Mol Biol       Date:  1995-02-03       Impact factor: 5.469

5.  A robust and cost-effective method for the production of Val, Leu, Ile (delta 1) methyl-protonated 15N-, 13C-, 2H-labeled proteins.

Authors:  N K Goto; K H Gardner; G A Mueller; R C Willis; L E Kay
Journal:  J Biomol NMR       Date:  1999-04       Impact factor: 2.835

6.  Optimization of three-dimensional TROSY-type HCCH NMR correlation of aromatic (1)H-(13)C groups in proteins.

Authors:  A Meissner; O W Sorensen
Journal:  J Magn Reson       Date:  1999-08       Impact factor: 2.229

7.  [15N,1H]/[13C,1H]-TROSY for simultaneous detection of backbone 15N-1H, aromatic 13C-1H and side-chain 15N-1H2 correlations in large proteins.

Authors:  K Pervushin; D Braun; C Fernández; K Wüthrich
Journal:  J Biomol NMR       Date:  2000-07       Impact factor: 2.835

8.  Simultaneous CT-13C and VT-15N chemical shift labelling: application to 3D NOESY-CH3NH and 3D 13C,15N HSQC-NOESY-CH3NH.

Authors:  D Uhrín; J Bramham; S J Winder; P N Barlow
Journal:  J Biomol NMR       Date:  2000-11       Impact factor: 2.835

  8 in total
  10 in total

1.  (3,2)D GFT-NMR experiments for fast data collection from proteins.

Authors:  Youlin Xia; Guang Zhu; Sudha Veeraraghavan; Xiaolian Gao
Journal:  J Biomol NMR       Date:  2004-08       Impact factor: 2.835

2.  15N and 13C- SOFAST-HMQC editing enhances 3D-NOESY sensitivity in highly deuterated, selectively [1H,13C]-labeled proteins.

Authors:  Paolo Rossi; Youlin Xia; Nandish Khanra; Gianluigi Veglia; Charalampos G Kalodimos
Journal:  J Biomol NMR       Date:  2016-11-23       Impact factor: 2.835

3.  Determination of all nOes in 1H-13C-Me-ILV-U-2H-15N proteins with two time-shared experiments.

Authors:  Dominique P Frueh; David A Vosburg; Christopher T Walsh; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2006-01       Impact factor: 2.835

4.  Time-shared experiments for efficient assignment of triple-selectively labeled proteins.

Authors:  Frank Löhr; Aisha Laguerre; Christoph Bock; Sina Reckel; Peter J Connolly; Norzehan Abdul-Manan; Franz Tumulka; Rupert Abele; Jonathan M Moore; Volker Dötsch
Journal:  J Magn Reson       Date:  2014-09-30       Impact factor: 2.229

5.  1H(C) and 1H(N) total NOE correlations in a single 3D NMR experiment. 15N and 13C time-sharing in t1 and t2 dimensions for simultaneous data acquisition.

Authors:  Youlin Xia; Adelinda Yee; Cheryl H Arrowsmith; Xiaolian Gao
Journal:  J Biomol NMR       Date:  2003-11       Impact factor: 2.835

6.  4D Non-uniformly sampled C,C-NOESY experiment for sequential assignment of 13C, 15N-labeled RNAs.

Authors:  Jan Stanek; Peter Podbevšek; Wiktor Koźmiński; Janez Plavec; Mirko Cevec
Journal:  J Biomol NMR       Date:  2013-08-21       Impact factor: 2.835

Review 7.  Practical aspects of NMR signal assignment in larger and challenging proteins.

Authors:  Dominique P Frueh
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-12-15       Impact factor: 9.795

8.  Time-shared HSQC-NOESY for accurate distance constraints measured at high-field in (15)N-(13)C-ILV methyl labeled proteins.

Authors:  Dominique P Frueh; Alison Leed; Haribabu Arthanari; Alexander Koglin; Christopher T Walsh; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2009-11       Impact factor: 2.835

9.  Selective diagonal-free (13)C, (13)C-edited aliphatic-aromatic NOESY experiment with non-uniform sampling.

Authors:  Jan Stanek; Michał Nowakowski; Saurabh Saxena; Katarzyna Ruszczyńska-Bartnik; Andrzej Ejchart; Wiktor Koźmiński
Journal:  J Biomol NMR       Date:  2013-05-09       Impact factor: 2.835

10.  Simultaneous detection of amide and methyl correlations using a time shared NMR experiment: application to binding epitope mapping.

Authors:  Peter Würtz; Olli Aitio; Maarit Hellman; Perttu Permi
Journal:  J Biomol NMR       Date:  2007-08-24       Impact factor: 2.582

  10 in total

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