Literature DB >> 16505962

Determination of all nOes in 1H-13C-Me-ILV-U-2H-15N proteins with two time-shared experiments.

Dominique P Frueh1, David A Vosburg, Christopher T Walsh, Gerhard Wagner.   

Abstract

We present two time-shared experiments that enable the characterization of all nOes in 1H-13C-ILV methyl-labelled proteins that are otherwise uniformly deuterated and 15N enriched and possibly selectively protonated for distinct residue types. A 3D experiment simultaneously provides the spectra of a 3D NOESY-HN-TROSY and of a 3D NOESY-HC-PEP-HSQC. Thus, nOes from any protons to methyl or amide protons are dispersed with respect to 15N and 13C chemical shifts, respectively. The single 4D experiment presented here yields simultaneously the four 4D experiments HC-HSQC-NOESY-HC-PEP-HSQC, HC-HSQC-NOESY-HN-TROSY, HN-HSQC-NOESY-HN-TROSY and HN-HSQC-NOESY-HC-PEP-HSQC. This allows for the unambiguous determination of all nOes involving amide and methyl protons. The method was applied to a (1H,13C)-ILV-(1H)-FY-(U-2H,15N) sample of a 37 kDa di-domain of the E. coli enterobactin synthetase module EntF.

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Year:  2006        PMID: 16505962     DOI: 10.1007/s10858-005-5338-4

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  19 in total

1.  Three-dimensional protein NMR TROSY-type (15)N-resolved (1)H(N)-(1)H(N) NOESY spectra with diagonal peak suppression.

Authors:  A Meissner; O W SŁrensen
Journal:  J Magn Reson       Date:  2000-01       Impact factor: 2.229

Review 2.  Genetics and assembly line enzymology of siderophore biosynthesis in bacteria.

Authors:  Jorge H Crosa; Christopher T Walsh
Journal:  Microbiol Mol Biol Rev       Date:  2002-06       Impact factor: 11.056

3.  Accelerated acquisition of high resolution triple-resonance spectra using non-uniform sampling and maximum entropy reconstruction.

Authors:  David Rovnyak; Dominique P Frueh; Mallika Sastry; Zhen-Yu J Sun; Alan S Stern; Jeffrey C Hoch; Gerhard Wagner
Journal:  J Magn Reson       Date:  2004-09       Impact factor: 2.229

4.  Integration of spin-state-selective excitation into 2D NMR correlation experiments with the heteronuclear ZQ/2Q pi rotations for 1JXH- resolved E.COSY-type measurements of heteronuclear coupling constants in proteins.

Authors:  A Meissner; J O Duus; O W Sørensen
Journal:  J Biomol NMR       Date:  1997-07       Impact factor: 2.835

5.  A simultaneous (15)N, (1)H- and (13)C, (1)H-HSQC with sensitivity enhancement and a heteronuclear gradient echo.

Authors:  M Sattler; M Maurer; J Schleucher; C Griesinger
Journal:  J Biomol NMR       Date:  1995-01       Impact factor: 2.835

6.  Application of nonlinear sampling schemes to COSY-type spectra.

Authors:  P Schmieder; A S Stern; G Wagner; J C Hoch
Journal:  J Biomol NMR       Date:  1993-09       Impact factor: 2.835

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  Overcoming the overlap problem in the assignment of 1H NMR spectra of larger proteins by use of three-dimensional heteronuclear 1H-15N Hartmann-Hahn-multiple quantum coherence and nuclear Overhauser-multiple quantum coherence spectroscopy: application to interleukin 1 beta.

Authors:  D Marion; P C Driscoll; L E Kay; P T Wingfield; A Bax; A M Gronenborn; G M Clore
Journal:  Biochemistry       Date:  1989-07-25       Impact factor: 3.162

9.  Transverse relaxation optimized 3D and 4D 15n/15N separated NOESY experiments of 15N labeled proteins.

Authors:  Y Xia; K Sze; G Zhu
Journal:  J Biomol NMR       Date:  2000-11       Impact factor: 2.835

10.  Sensitivity improvement of transverse relaxation-optimized spectroscopy.

Authors:  M Rance; J P Loria
Journal:  J Magn Reson       Date:  1999-01       Impact factor: 2.229

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  15 in total

1.  Identification of HN-methyl NOEs in large proteins using simultaneous amide-methyl TROSY-based detection.

Authors:  Chenyun Guo; Vitali Tugarinov
Journal:  J Biomol NMR       Date:  2008-11-11       Impact factor: 2.835

Review 2.  Structural insights into nonribosomal peptide enzymatic assembly lines.

Authors:  Alexander Koglin; Christopher T Walsh
Journal:  Nat Prod Rep       Date:  2009-05-22       Impact factor: 13.423

3.  A suite of pulse sequences based on multiple sequential acquisitions at one and two radiofrequency channels for solid-state magic-angle spinning NMR studies of proteins.

Authors:  Kshama Sharma; Perunthiruthy K Madhu; Kaustubh R Mote
Journal:  J Biomol NMR       Date:  2016-06-30       Impact factor: 2.835

4.  A 3D time-shared NOESY experiment designed to provide optimal resolution for accurate assignment of NMR distance restraints in large proteins.

Authors:  Subrata H Mishra; Bradley J Harden; Dominique P Frueh
Journal:  J Biomol NMR       Date:  2014-11-09       Impact factor: 2.835

5.  Time-shared experiments for efficient assignment of triple-selectively labeled proteins.

Authors:  Frank Löhr; Aisha Laguerre; Christoph Bock; Sina Reckel; Peter J Connolly; Norzehan Abdul-Manan; Franz Tumulka; Rupert Abele; Jonathan M Moore; Volker Dötsch
Journal:  J Magn Reson       Date:  2014-09-30       Impact factor: 2.229

Review 6.  NMR methods for structural studies of large monomeric and multimeric proteins.

Authors:  Dominique P Frueh; Andrew C Goodrich; Subrata H Mishra; Scott R Nichols
Journal:  Curr Opin Struct Biol       Date:  2013-07-11       Impact factor: 6.809

7.  Dynamic thiolation-thioesterase structure of a non-ribosomal peptide synthetase.

Authors:  Dominique P Frueh; Haribabu Arthanari; Alexander Koglin; David A Vosburg; Andrew E Bennett; Christopher T Walsh; Gerhard Wagner
Journal:  Nature       Date:  2008-08-14       Impact factor: 49.962

8.  Structural basis for the selectivity of the external thioesterase of the surfactin synthetase.

Authors:  Alexander Koglin; Frank Löhr; Frank Bernhard; Vladimir V Rogov; Dominique P Frueh; Eric R Strieter; Mohammad R Mofid; Peter Güntert; Gerhard Wagner; Christopher T Walsh; Mohamed A Marahiel; Volker Dötsch
Journal:  Nature       Date:  2008-08-14       Impact factor: 49.962

9.  Coupled decomposition of four-dimensional NOESY spectra.

Authors:  Sebastian Hiller; Ilghis Ibraghimov; Gerhard Wagner; Vladislav Y Orekhov
Journal:  J Am Chem Soc       Date:  2009-09-16       Impact factor: 15.419

Review 10.  Practical aspects of NMR signal assignment in larger and challenging proteins.

Authors:  Dominique P Frueh
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-12-15       Impact factor: 9.795

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