Literature DB >> 11142515

Simultaneous CT-13C and VT-15N chemical shift labelling: application to 3D NOESY-CH3NH and 3D 13C,15N HSQC-NOESY-CH3NH.

D Uhrín1, J Bramham, S J Winder, P N Barlow.   

Abstract

Based on the HSQC scheme, we have designed a 2D heterocorrelated experiment which combines constant time (CT) 13C and variable time (VT) 15N chemical shift labelling. Although applicable to all carbons, this mode is particularly suitable for simultaneous recording of methyl-carbon and nitrogen chemical shifts at high digital resolution. The methyl carbon magnetisation is in the transverse plane during the whole CT period (1/J(CC) = 28.6 ms). The magnetisation originating from NH protons is initially stored in the 2HzNz state, then prior to the VT chemical shift labelling period is converted into 2HzNy coherence. The VT -15N mode eliminates the effect of 1J(N,CO) and 1,2J(N,CA) coupling constants without the need for band-selective carbon pulses. An optional editing procedure is incorporated which eliminates signals from CH2 groups, thus removing any potential overlap with the CH3 signals. The CT-13CH3,VT-15N HSQC building block is used to construct two 3D experiments: 3D NOESY-CH3NH and 3D 13C,15N HSQC-NOESY-CH3NH. Combined use of these experiments yields proton and heteronuclear chemical shifts for moieties experiencing NOEs with CH3 and NH protons. These NOE interactions are resolved as a consequence of the high digital resolution in the carbon and nitrogen chemical shifts of CH3 and NH groups, respectively. The techniques are illustrated using a double labelled sample of the CH domain from calponin.

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Year:  2000        PMID: 11142515     DOI: 10.1023/a:1026550629595

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  9 in total

1.  An efficient strategy for assignment of cross-peaks in 3D heteronuclear NOESY experiments.

Authors:  T Diercks; M Coles; H Kessler
Journal:  J Biomol NMR       Date:  1999-10       Impact factor: 2.835

2.  Four-dimensional 13C/13C-edited nuclear Overhauser enhancement spectroscopy of a protein in solution: application to interleukin 1 beta.

Authors:  G M Clore; L E Kay; A Bax; A M Gronenborn
Journal:  Biochemistry       Date:  1991-01-08       Impact factor: 3.162

3.  HSQC-based methyl group selection via gradients in mutidimensional NMR spectroscopy of proteins.

Authors:  T Diercks; M Schwaiger; H Kessler
Journal:  J Magn Reson       Date:  1998-02       Impact factor: 2.229

4.  Stereospecific assignments of Val and Leu methyl groups in a selectively 13C-labeled 18 kDa polypeptide using 3D CT-(H) CCH-COSY and 2d 1Jc-c edited heteronuclear correlation experiments.

Authors:  W Hu; E R Zuiderweg
Journal:  J Magn Reson B       Date:  1996-10

5.  Time-saving methods for heteronuclear multidimensional NMR of ((13)C, (15)N) doubly labeled proteins.

Authors:  R Boelens; M Burgering; R H Fogh; R Kaptein
Journal:  J Biomol NMR       Date:  1994-03       Impact factor: 2.835

6.  3D HCCH(3)-TOCSY for resonance assignment of methyl-containing side chains in (13)C-labeled proteins.

Authors:  D Uhrín; S Uhrínová; C Leadbeater; J Nairn; N C Price; P N Barlow
Journal:  J Magn Reson       Date:  2000-02       Impact factor: 2.229

7.  Global folds of highly deuterated, methyl-protonated proteins by multidimensional NMR.

Authors:  K H Gardner; M K Rosen; L E Kay
Journal:  Biochemistry       Date:  1997-02-11       Impact factor: 3.162

8.  1H, 13C, and 15N resonance assignments and secondary structure analysis of the HU protein from Bacillus stearothermophilus using two- and three-dimensional double- and triple-resonance heteronuclear magnetic resonance spectroscopy.

Authors:  H Vis; R Boelens; M Mariani; R Stroop; C E Vorgias; K S Wilson; R Kaptein
Journal:  Biochemistry       Date:  1994-12-13       Impact factor: 3.162

9.  Four-dimensional heteronuclear triple-resonance NMR spectroscopy of interleukin-1 beta in solution.

Authors:  L E Kay; G M Clore; A Bax; A M Gronenborn
Journal:  Science       Date:  1990-07-27       Impact factor: 47.728

  9 in total
  11 in total

1.  Simultaneous alpha/beta spin-state selection for (13)C and (15)N from a time-shared HSQC-IPAP experiment.

Authors:  Pau Nolis; Teodor Parella
Journal:  J Biomol NMR       Date:  2006-12-12       Impact factor: 2.835

2.  Identification of HN-methyl NOEs in large proteins using simultaneous amide-methyl TROSY-based detection.

Authors:  Chenyun Guo; Vitali Tugarinov
Journal:  J Biomol NMR       Date:  2008-11-11       Impact factor: 2.835

3.  Solution structure of a functionally active fragment of decay-accelerating factor.

Authors:  Stanislava Uhrinova; Feng Lin; Graeme Ball; Krystyna Bromek; Dusan Uhrin; M Edward Medof; Paul N Barlow
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-02       Impact factor: 11.205

4.  Determination of all nOes in 1H-13C-Me-ILV-U-2H-15N proteins with two time-shared experiments.

Authors:  Dominique P Frueh; David A Vosburg; Christopher T Walsh; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2006-01       Impact factor: 2.835

5.  3D H(aro)-NOESY-CH3NH and C(aro)-NOESY-CH3NH experiments for double labeled proteins.

Authors:  Y Xia; D Man; G Zhu
Journal:  J Biomol NMR       Date:  2001-04       Impact factor: 2.835

6.  Spatially selective heteronuclear multiple-quantum coherence spectroscopy for biomolecular NMR studies.

Authors:  Bharathwaj Sathyamoorthy; David M Parish; Gaetano T Montelione; Rong Xiao; Thomas Szyperski
Journal:  Chemphyschem       Date:  2014-04-30       Impact factor: 3.102

7.  Time-shared experiments for efficient assignment of triple-selectively labeled proteins.

Authors:  Frank Löhr; Aisha Laguerre; Christoph Bock; Sina Reckel; Peter J Connolly; Norzehan Abdul-Manan; Franz Tumulka; Rupert Abele; Jonathan M Moore; Volker Dötsch
Journal:  J Magn Reson       Date:  2014-09-30       Impact factor: 2.229

Review 8.  Practical aspects of NMR signal assignment in larger and challenging proteins.

Authors:  Dominique P Frueh
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-12-15       Impact factor: 9.795

9.  Time-shared HSQC-NOESY for accurate distance constraints measured at high-field in (15)N-(13)C-ILV methyl labeled proteins.

Authors:  Dominique P Frueh; Alison Leed; Haribabu Arthanari; Alexander Koglin; Christopher T Walsh; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2009-11       Impact factor: 2.835

10.  Simultaneous detection of amide and methyl correlations using a time shared NMR experiment: application to binding epitope mapping.

Authors:  Peter Würtz; Olli Aitio; Maarit Hellman; Perttu Permi
Journal:  J Biomol NMR       Date:  2007-08-24       Impact factor: 2.582

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