Literature DB >> 11226246

The role of structure, energy landscape, dynamics, and allostery in the enzymatic function of myoglobin.

H Frauenfelder1, B H McMahon, R H Austin, K Chu, J T Groves.   

Abstract

The grail of protein science is the connection between structure and function. For myoglobin (Mb) this goal is close. Described as only a passive dioxygen storage protein in texts, we argue here that Mb is actually an allosteric enzyme that can catalyze reactions among small molecules. Studies of the structural, spectroscopic, and kinetic properties of Mb lead to a model that relates structure, energy landscape, dynamics, and function. Mb functions as a miniature chemical reactor, concentrating and orienting diatomic molecules such as NO, CO, O(2), and H(2)O(2) in highly conserved internal cavities. Reactions can be controlled because Mb exists in distinct taxonomic substates with different catalytic properties and connectivities of internal cavities.

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Year:  2001        PMID: 11226246      PMCID: PMC30145          DOI: 10.1073/pnas.041614298

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

1.  X-ray structure determination of a metastable state of carbonmonoxy myoglobin after photodissociation.

Authors:  H Hartmann; S Zinser; P Komninos; R T Schneider; G U Nienhaus; F Parak
Journal:  Proc Natl Acad Sci U S A       Date:  1996-07-09       Impact factor: 11.205

2.  Ligand binding to heme proteins. V. Light-induced relaxation in proximal mutants L89I and H97F of carbonmonoxymyoglobin.

Authors:  Y Abadan; E Y Chien; K Chu; C D Eng; G U Nienhaus; S G Sligar
Journal:  Biophys J       Date:  1995-06       Impact factor: 4.033

3.  Accelerated reaction of nitric oxide with O2 within the hydrophobic interior of biological membranes.

Authors:  X Liu; M J Miller; M S Joshi; D D Thomas; J R Lancaster
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-03       Impact factor: 11.205

4.  Functional modulation by lactate of myoglobin. A monomeric allosteric hemoprotein.

Authors:  B Giardina; P Ascenzi; M E Clementi; G De Sanctis; M Rizzi; M Coletta
Journal:  J Biol Chem       Date:  1996-07-19       Impact factor: 5.157

5.  Ligand binding to heme proteins. VI. Interconversion of taxonomic substates in carbonmonoxymyoglobin.

Authors:  J B Johnson; D C Lamb; H Frauenfelder; J D Müller; B McMahon; G U Nienhaus; R D Young
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

6.  Conversion of metmyoglobin to NO myoglobin in the presence of nitrite and reductants.

Authors:  M Nakamura; S Nakamura
Journal:  Biochim Biophys Acta       Date:  1996-04-17

7.  Electron transfer and protein dynamics in the photosynthetic reaction center.

Authors:  B H McMahon; J D Müller; C A Wraight; G U Nienhaus
Journal:  Biophys J       Date:  1998-05       Impact factor: 4.033

Review 8.  Protein oxidation in aging, disease, and oxidative stress.

Authors:  B S Berlett; E R Stadtman
Journal:  J Biol Chem       Date:  1997-08-15       Impact factor: 5.157

9.  Ligand migration in sperm whale myoglobin.

Authors:  E E Scott; Q H Gibson
Journal:  Biochemistry       Date:  1997-09-30       Impact factor: 3.162

10.  Mechanism of NO-induced oxidation of myoglobin and hemoglobin.

Authors:  R F Eich; T Li; D D Lemon; D H Doherty; S R Curry; J F Aitken; A J Mathews; K A Johnson; R D Smith; G N Phillips; J S Olson
Journal:  Biochemistry       Date:  1996-06-04       Impact factor: 3.162

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  83 in total

1.  Proteins: paradigms of complexity.

Authors:  Hans Frauenfelder
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-19       Impact factor: 11.205

2.  Theoretical investigation of infrared spectra and pocket dynamics of photodissociated carbonmonoxy myoglobin.

Authors:  David R Nutt; Markus Meuwly
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

3.  Direct observation of tiers in the energy landscape of a chromoprotein: a single-molecule study.

Authors:  Clemens Hofmann; Thijs J Aartsma; Hartmut Michel; Jürgen Köhler
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-11       Impact factor: 11.205

4.  Slaving: solvent fluctuations dominate protein dynamics and functions.

Authors:  P W Fenimore; H Frauenfelder; B H McMahon; F G Parak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-20       Impact factor: 11.205

Review 5.  Myoglobin: the hydrogen atom of biology and a paradigm of complexity.

Authors:  H Frauenfelder; B H McMahon; P W Fenimore
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-14       Impact factor: 11.205

6.  Myoglobin-CO substate structures and dynamics: multidimensional vibrational echoes and molecular dynamics simulations.

Authors:  Kusai A Merchant; W G Noid; Ryo Akiyama; Ilya J Finkelstein; Alexei Goun; Brian L McClain; Roger F Loring; M D Fayer
Journal:  J Am Chem Soc       Date:  2003-11-12       Impact factor: 15.419

7.  Coupling of protein relaxation to ligand binding and migration in myoglobin.

Authors:  Noam Agmon
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

8.  DNA dynamically directs its own transcription initiation.

Authors:  Chu H Choi; George Kalosakas; Kim O Rasmussen; Makoto Hiromura; Alan R Bishop; Anny Usheva
Journal:  Nucleic Acids Res       Date:  2004-03-05       Impact factor: 16.971

9.  Bulk-solvent and hydration-shell fluctuations, similar to alpha- and beta-fluctuations in glasses, control protein motions and functions.

Authors:  P W Fenimore; Hans Frauenfelder; B H McMahon; R D Young
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-24       Impact factor: 11.205

10.  Outer-sphere oxidation of Fe(II) in nitrosylmyoglobin by ferricyanide.

Authors:  Jens K S Møller; Leif H Skibsted
Journal:  J Biol Inorg Chem       Date:  2014-02-13       Impact factor: 3.358

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