Literature DB >> 11142516

Transverse relaxation optimized 3D and 4D 15n/15N separated NOESY experiments of 15N labeled proteins.

Y Xia1, K Sze, G Zhu.   

Abstract

NMR studies of protein structures require knowledge of spectral assignments through correlation spectroscopy and the measurement of dipolar interactions by NOESY-type experiments. In order to obtain NOEs for protons with degenerate chemical shifts, which is particularly common for large proteins with significant helical content, 3D and 4D 15N/15N separated NOESY experiments (HSQC-NOESY-HSQC) are essential for NMR studies of these proteins. TROSY sections could replace the latter or both HSQC parts of the 3D and 4D 15N/15N separated HSQC-NOESY-HSQC pulse sequences to enhance signal sensitivity and improve resolution. For a 1.0 mM, 100% 15N and 70% 2H-labeled Trichosanthin sample (approximately 27 kDa) at 5 degrees C it is found that sensitivity enhancements could only be obtained when TROSY sections replace the latter HSQC parts of 3D and 4D 15N/15N separated HSQC-NOESY-HSQC pulse sequences. The sensitivities of 3D and 4D HSQC-NOESY-TROSY experiments are enhanced by 62% and 8% at 5 degrees C, respectively, compared to their corresponding 3D and 4D HSQC-NOESY-HSQC experiments. Furthermore, the corresponding linewidths are, on average, decreased by 20% and 18% Hz in the HN and N2 dimensions, respectively. This enhancement of sensitivity depends on the molecular mass of the sample used and the lengths of the evolution times in the indirectly and directly detected dimensions.

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Year:  2000        PMID: 11142516     DOI: 10.1023/a:1026590201757

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  9 in total

1.  The 3D NOESY-[(1)H,(15)N,(1)H]-ZQ-TROSY NMR experiment with diagonal peak suppression.

Authors:  K V Pervushin; G Wider; R Riek; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

2.  Gradient and sensitivity enhancement of 2D TROSY with water flip-back, 3D NOESY-TROSY and TOCSY-TROSY experiments.

Authors:  G Zhu; X M Kong; K H Sze
Journal:  J Biomol NMR       Date:  1999-01       Impact factor: 2.835

3.  Integration of spin-state-selective excitation into 2D NMR correlation experiments with the heteronuclear ZQ/2Q pi rotations for 1JXH- resolved E.COSY-type measurements of heteronuclear coupling constants in proteins.

Authors:  A Meissner; J O Duus; O W Sørensen
Journal:  J Biomol NMR       Date:  1997-07       Impact factor: 2.835

4.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

5.  [13C]-constant-time [15N,1H]-TROSY-HNCA for sequential assignments of large proteins.

Authors:  M Salzmann; K Pervushin; G Wider; H Senn; K Wüthrich
Journal:  J Biomol NMR       Date:  1999-05       Impact factor: 2.835

6.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

7.  Improved 1HN-detected triple resonance TROSY-based experiments.

Authors:  D Yang; L E Kay
Journal:  J Biomol NMR       Date:  1999-01       Impact factor: 2.835

8.  TROSY in triple-resonance experiments: new perspectives for sequential NMR assignment of large proteins.

Authors:  M Salzmann; K Pervushin; G Wider; H Senn; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1998-11-10       Impact factor: 11.205

9.  Four-dimensional heteronuclear triple-resonance NMR spectroscopy of interleukin-1 beta in solution.

Authors:  L E Kay; G M Clore; A Bax; A M Gronenborn
Journal:  Science       Date:  1990-07-27       Impact factor: 47.728

  9 in total
  8 in total

1.  Conformation and dynamics of the periplasmic membrane-protein-chaperone complexes OmpX-Skp and tOmpA-Skp.

Authors:  Björn M Burmann; Congwei Wang; Sebastian Hiller
Journal:  Nat Struct Mol Biol       Date:  2013-09-29       Impact factor: 15.369

2.  The type III secretion chaperone SycE promotes a localized disorder-to-order transition in the natively unfolded effector YopE.

Authors:  Loren Rodgers; Alicia Gamez; Roland Riek; Partho Ghosh
Journal:  J Biol Chem       Date:  2008-05-23       Impact factor: 5.157

3.  Determination of all nOes in 1H-13C-Me-ILV-U-2H-15N proteins with two time-shared experiments.

Authors:  Dominique P Frueh; David A Vosburg; Christopher T Walsh; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2006-01       Impact factor: 2.835

4.  Fast acquisition of high resolution 4-D amide-amide NOESY with diagonal suppression, sparse sampling and FFT-CLEAN.

Authors:  Jon W Werner-Allen; Brian E Coggins; Pei Zhou
Journal:  J Magn Reson       Date:  2010-02-21       Impact factor: 2.229

5.  1H(C) and 1H(N) total NOE correlations in a single 3D NMR experiment. 15N and 13C time-sharing in t1 and t2 dimensions for simultaneous data acquisition.

Authors:  Youlin Xia; Adelinda Yee; Cheryl H Arrowsmith; Xiaolian Gao
Journal:  J Biomol NMR       Date:  2003-11       Impact factor: 2.835

Review 6.  Practical aspects of NMR signal assignment in larger and challenging proteins.

Authors:  Dominique P Frueh
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-12-15       Impact factor: 9.795

7.  Rapid protein global fold determination using ultrasparse sampling, high-dynamic range artifact suppression, and time-shared NOESY.

Authors:  Brian E Coggins; Jonathan W Werner-Allen; Anthony Yan; Pei Zhou
Journal:  J Am Chem Soc       Date:  2012-09-21       Impact factor: 15.419

8.  Regulation of PD-L1 through direct binding of cholesterol to CRAC motifs.

Authors:  Qian Wang; Yunlei Cao; Lijuan Shen; Taoran Xiao; Ruiyu Cao; Shukun Wei; Meng Tang; Lingyu Du; Hongyi Wu; Bin Wu; Yang Yu; Shuqing Wang; Maorong Wen; Bo OuYang
Journal:  Sci Adv       Date:  2022-08-26       Impact factor: 14.957

  8 in total

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