Literature DB >> 12519972

CnidBase: The Cnidarian Evolutionary Genomics Database.

Joseph F Ryan1, John R Finnerty.   

Abstract

CnidBase, the Cnidarian Evolutionary Genomics Database, is a tool for investigating the evolutionary, developmental and ecological factors that affect gene expression and gene function in cnidarians. In turn, CnidBase will help to illuminate the role of specific genes in shaping cnidarian biodiversity in the present day and in the distant past. CnidBase highlights evolutionary changes between species within the phylum Cnidaria and structures genomic and expression data to facilitate comparisons to non-cnidarian metazoans. CnidBase aims to further the progress that has already been made in the realm of cnidarian evolutionary genomics by creating a central community resource which will help drive future research and facilitate more accurate classification and comparison of new experimental data with existing data. CnidBase is available at http://cnidbase.bu.edu/.

Mesh:

Year:  2003        PMID: 12519972      PMCID: PMC165563          DOI: 10.1093/nar/gkg116

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  22 in total

1.  RefSeq and LocusLink: NCBI gene-centered resources.

Authors:  K D Pruitt; D R Maglott
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  Gene structure and larval expression of cnox-2Am from the coral Acropora millepora.

Authors:  D C Hayward; J Catmull; J S Reece-Hoyes; H Berghammer; H Dodd; S J Hann; D J Miller; E E Ball
Journal:  Dev Genes Evol       Date:  2001-01       Impact factor: 0.900

3.  Colony integration and the expression of the Hox gene, Cnox-2, in Hydractinia symbiolongicarpus (Cnidaria: Hydrozoa).

Authors:  P Cartwright; L W Buss
Journal:  J Exp Zool       Date:  1999-04-15

4.  Expression of a Hox gene, Cnox-2, and the division of labor in a colonial hydroid.

Authors:  P Cartwright; J Bowsher; L W Buss
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-02       Impact factor: 11.205

5.  Did homeodomain proteins duplicate before the origin of angiosperms, fungi, and metazoa?

Authors:  G Bharathan; B J Janssen; E A Kellogg; N Sinha
Journal:  Proc Natl Acad Sci U S A       Date:  1997-12-09       Impact factor: 11.205

6.  Origin of the metazoan phyla: molecular clocks confirm paleontological estimates.

Authors:  F J Ayala; A Rzhetsky; F J Ayala
Journal:  Proc Natl Acad Sci U S A       Date:  1998-01-20       Impact factor: 11.205

7.  Evolution of Antp-class genes and differential expression of Hydra Hox/paraHox genes in anterior patterning.

Authors:  D Gauchat; F Mazet; C Berney; M Schummer; S Kreger; J Pawlowski; B Galliot
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-25       Impact factor: 11.205

8.  The HOX-like gene Cnox2-Pc is expressed at the anterior region in all life cycle stages of the jellyfish Podocoryne carnea.

Authors:  L M Masuda-Nakagawa; H Gröer; B L Aerne; V Schmid
Journal:  Dev Genes Evol       Date:  2000-03       Impact factor: 0.900

9.  The Mouse Gene Expression Database (GXD).

Authors:  M Ringwald; J T Eppig; D A Begley; J P Corradi; I J McCright; T F Hayamizu; D P Hill; J A Kadin; J E Richardson
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

10.  Trans-spliced leader addition to mRNAs in a cnidarian.

Authors:  N A Stover; R E Steele
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-01       Impact factor: 11.205

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  8 in total

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Authors:  Mylena D Santander; Maximiliano M Maronna; Joseph F Ryan; Sónia C S Andrade
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2.  Production of a reference transcriptome and transcriptomic database (PocilloporaBase) for the cauliflower coral, Pocillopora damicornis.

Authors:  Nikki Traylor-Knowles; Brian R Granger; Tristan J Lubinski; Jignesh R Parikh; Sara Garamszegi; Yu Xia; Jarrod A Marto; Les Kaufman; John R Finnerty
Journal:  BMC Genomics       Date:  2011-11-29       Impact factor: 3.969

3.  StellaBase: the Nematostella vectensis Genomics Database.

Authors:  James C Sullivan; Joseph F Ryan; James A Watson; Jeramy Webb; James C Mullikin; Daniel Rokhsar; John R Finnerty
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

4.  Comparative genomics of the syndecans defines an ancestral genomic context associated with matrilins in vertebrates.

Authors:  Ritu Chakravarti; Josephine C Adams
Journal:  BMC Genomics       Date:  2006-04-18       Impact factor: 3.969

5.  FunnyBase: a systems level functional annotation of Fundulus ESTs for the analysis of gene expression.

Authors:  Justin E Paschall; Marjorie F Oleksiak; Jeffrey D VanWye; Jennifer L Roach; J Andrew Whitehead; Gerald J Wyckoff; Kevin J Kolell; Douglas L Crawford
Journal:  BMC Genomics       Date:  2004-12-20       Impact factor: 3.969

6.  An Atlas of annotations of Hydra vulgaris transcriptome.

Authors:  Daniela Evangelista; Kumar Parijat Tripathi; Mario Rosario Guarracino
Journal:  BMC Bioinformatics       Date:  2016-09-22       Impact factor: 3.169

7.  Spatial gene expression quantification: a tool for analysis of in situ hybridizations in sea anemone Nematostella vectensis.

Authors:  Daniel Botman; Jaap A Kaandorp
Journal:  BMC Res Notes       Date:  2012-10-05

8.  A computational approach towards a gene regulatory network for the developing Nematostella vectensis gut.

Authors:  Daniel Botman; Eric Röttinger; Mark Q Martindale; Johann de Jong; Jaap A Kaandorp
Journal:  PLoS One       Date:  2014-07-30       Impact factor: 3.240

  8 in total

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