Literature DB >> 11014593

The auto-orientation in high magnetic fields of oxidized cytochrome b562 as source of constraints for solution structure determination.

F Arnesano1, L Banci, I Bertini, K Van Der Wetering, M Czisch, R Kaptein.   

Abstract

15N-1H 1J couplings were measured at 500 MHz and 800 MHz for 15N enriched oxidized cytochrome b562 from E. coli. The magnetic field dependence of 70 1J values, which could be measured without signal overlap, shows that there is a molecular magnetic anisotropy which provides partial molecular orientation in the magnetic field and, consequently, residual dipolar couplings (rdc). The rdc were used as further constraints to improve the existing structure [Arnesano et al. (1999) Biochemistry, 38, 8657-8670] with a protocol which uses the rhombic anisotropy [Banci et al. (1998) J. Am. Ctherz. Soc., 120, 12903-12909]. The overall large molecular magnetic anisotropy has been found to be determined by both the low spin iron (III) and the four helix bundle structure magnetic susceptibility anisotropy contributions.

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Year:  2000        PMID: 11014593     DOI: 10.1023/a:1008308501053

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  20 in total

1.  The solution structure of oxidized Escherichia coli cytochrome b562.

Authors:  F Arnesano; L Banci; I Bertini; J Faraone-Mennella; A Rosato; P D Barker; A R Fersht
Journal:  Biochemistry       Date:  1999-07-06       Impact factor: 3.162

2.  Domain orientation and dynamics in multidomain proteins from residual dipolar couplings.

Authors:  M W Fischer; J A Losonczi; J L Weaver; J H Prestegard
Journal:  Biochemistry       Date:  1999-07-13       Impact factor: 3.162

3.  Solution structure of oxidized horse heart cytochrome c.

Authors:  L Banci; I Bertini; H B Gray; C Luchinat; T Reddig; A Rosato; P Turano
Journal:  Biochemistry       Date:  1997-08-12       Impact factor: 3.162

4.  NMR View: A computer program for the visualization and analysis of NMR data.

Authors:  B A Johnson; R A Blevins
Journal:  J Biomol NMR       Date:  1994-09       Impact factor: 2.835

5.  Molecular Zeeman effect in formamide and the -proton chemical shift in poly(L-alanine).

Authors:  H L Tigelaar; W H Flygare
Journal:  J Am Chem Soc       Date:  1972-01-26       Impact factor: 15.419

6.  Refined structure of cytochrome b562 from Escherichia coli at 1.4 A resolution.

Authors:  K Hamada; P H Bethge; F S Mathews
Journal:  J Mol Biol       Date:  1995-04-14       Impact factor: 5.469

7.  NMR approaches for monitoring domain orientations in calcium-binding proteins in solution using partial replacement of Ca2+ by Tb3+.

Authors:  R R Biekofsky; F W Muskett; J M Schmidt; S R Martin; J P Browne; P M Bayley; J Feeney
Journal:  FEBS Lett       Date:  1999-11-05       Impact factor: 4.124

8.  The solution structure of oxidized rat microsomal cytochrome b5.

Authors:  F Arnesano; L Banci; I Bertini; I C Felli
Journal:  Biochemistry       Date:  1998-01-06       Impact factor: 3.162

9.  Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution.

Authors:  J R Tolman; J M Flanagan; M A Kennedy; J H Prestegard
Journal:  Proc Natl Acad Sci U S A       Date:  1995-09-26       Impact factor: 11.205

10.  1H NMR study of the solution molecular and electronic structure of Escherichia coli ferricytochrome b562: evidence for S = 1/2 in equilibrium S = 5/2 spin equilibrium for intact His/Met ligation.

Authors:  J Z Wu; G N La Mar; L P Yu; K B Lee; F A Walker; M L Chiu; S G Sligar
Journal:  Biochemistry       Date:  1991-02-26       Impact factor: 3.162

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  6 in total

1.  Structure refinement of flexible proteins using dipolar couplings: application to the protein p8MTCP1.

Authors:  Hélène Déméné; Thierry Ducat; Philippe Barthe; Marc-André Delsuc; Christian Roumestand
Journal:  J Biomol NMR       Date:  2002-01       Impact factor: 2.835

2.  NMR-validated structural model for oxidized Rhodopseudomonas palustris cytochrome c(556).

Authors:  Ivano Bertini; Jasmin Faraone-Mennella; Harry B Gray; Claudio Luchinat; Giacomo Parigi; Jay R Winkler
Journal:  J Biol Inorg Chem       Date:  2004-01-20       Impact factor: 3.358

3.  Breaking symmetry in the structure determination of (large) symmetric protein dimers.

Authors:  Vadim Gaponenko; Amanda S Altieri; Jess Li; R Andrew Byrd
Journal:  J Biomol NMR       Date:  2002-10       Impact factor: 2.835

4.  Lanthanide induced residual dipolar couplings for the conformational investigation of peripheral 15NH2 moieties.

Authors:  I Bertini; I C Felli; C Luchinat
Journal:  J Biomol NMR       Date:  2000-12       Impact factor: 2.835

5.  Structure-independent cross-validation between residual dipolar couplings originating from internal and external orienting media.

Authors:  Renato Barbieri; Ivano Bertini; Yong-Min Lee; Claudio Luchinat; Aldrik H Velders
Journal:  J Biomol NMR       Date:  2002-04       Impact factor: 2.835

6.  15N-1H Residual dipolar coupling analysis of native and alkaline-K79A Saccharomyces cerevisiae cytochrome c.

Authors:  Michael Assfalg; Ivano Bertini; Paola Turano; A Grant Mauk; Jay R Winkler; Harry B Gray
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

  6 in total

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