Literature DB >> 9245419

Solution structure of oxidized horse heart cytochrome c.

L Banci1, I Bertini, H B Gray, C Luchinat, T Reddig, A Rosato, P Turano.   

Abstract

The solution structure of oxidized horse heart cytochrome c was obtained at pH 7.0 in 100 mM phosphate buffer from 2278 NOEs and 241 pseudocontact shift constraints. The final structure was refined through restrained energy minimization. A 35-member family, with RMSD values with respect to the average structure of 0.70 +/- 0.11 A and 1.21 +/- 0.14 A for the backbone and all heavy atoms, respectively, and with an average penalty function of 130 +/- 4.0 kJ/mol and 84 +/- 3.7 kJ/mol for NOE and pseudocontact shift constraints, respectively (corresponding to a target function of 0.9 A2 and 0.2 A2), was obtained. The solution structure is somewhat different from that recently reported (Qi et al., 1996) and appears to be similar to the X-ray structure of the same oxidation state (Bushnell et al., 1990). A noticeable difference is a rotation of 17 +/- 8 degrees of the imidazole plane between solid and solution structure. Detailed and accurate structural determinations are important within the frame of the current debate of the structural rearrangements occurring upon oxidation or reduction. From the obtained magnetic susceptibility tensor a separation of the hyperfine shifts into their contact and pseudocontact contributions is derived and compared to that of the analogous isoenzyme from S. cerevisiae and to previous results.

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Year:  1997        PMID: 9245419     DOI: 10.1021/bi970724w

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  55 in total

1.  The molecular structure of an unusual cytochrome c2 determined at 2.0 A; the cytochrome cH from Methylobacterium extorquens.

Authors:  J Read; R Gill; S L Dales; J B Cooper; S P Wood; C Anthony
Journal:  Protein Sci       Date:  1999-06       Impact factor: 6.725

2.  The use of chemical shift temperature gradients to establish the paramagnetic susceptibility tensor orientation: implication for structure determination/refinement in paramagnetic metalloproteins.

Authors:  Z Xia; B D Nguyen; G N La Mar
Journal:  J Biomol NMR       Date:  2000-06       Impact factor: 2.835

3.  Structure-function relationship of reduced cytochrome c probed by complete solution structure determination in 30% acetonitrile/water solution.

Authors:  Sivashankar G Sivakolundu; Patricia Ann Mabrouk
Journal:  J Biol Inorg Chem       Date:  2003-02-15       Impact factor: 3.358

4.  NMR-validated structural model for oxidized Rhodopseudomonas palustris cytochrome c(556).

Authors:  Ivano Bertini; Jasmin Faraone-Mennella; Harry B Gray; Claudio Luchinat; Giacomo Parigi; Jay R Winkler
Journal:  J Biol Inorg Chem       Date:  2004-01-20       Impact factor: 3.358

5.  Enthalpy/entropy compensation phenomena in the reduction thermodynamics of electron transport metalloproteins.

Authors:  Gianantonio Battistuzzi; Marco Borsari; Giulia Di Rocco; Antonio Ranieri; Marco Sola
Journal:  J Biol Inorg Chem       Date:  2003-10-30       Impact factor: 3.358

6.  Effects of axial methionine coordination on the in-plane asymmetry of the heme electronic structure of cytochrome c.

Authors:  Naoki Tachiiri; Hikaru Hemmi; Shin-Ichi Joseph Takayama; Hajime Mita; Jun Hasegawa; Yoshihiro Sambongi; Yasuhiko Yamamoto
Journal:  J Biol Inorg Chem       Date:  2004-07-03       Impact factor: 3.358

7.  Redox-dependent conformational changes in eukaryotic cytochromes revealed by paramagnetic NMR spectroscopy.

Authors:  Alexander N Volkov; Sophie Vanwetswinkel; Karen Van de Water; Nico A J van Nuland
Journal:  J Biomol NMR       Date:  2012-02-10       Impact factor: 2.835

8.  ATP specifically drives refolding of non-native conformations of cytochrome c.

Authors:  Federica Sinibaldi; Giampiero Mei; Fabio Polticelli; M Cristina Piro; Barry D Howes; Giulietta Smulevich; Roberto Santucci; Franca Ascoli; Laura Fiorucci
Journal:  Protein Sci       Date:  2005-03-01       Impact factor: 6.725

9.  Insights into the alkaline transformation of ferricytochrome c from (1)H NMR studies in 30% acetonitrile-water.

Authors:  S G Sivakolundu; P A Mabrouk
Journal:  Protein Sci       Date:  2001-11       Impact factor: 6.725

10.  Reactive intermediates: molecular and MS-based approaches to assess the functional significance of chemical-protein adducts.

Authors:  Terrence J Monks; Serrine S Lau
Journal:  Toxicol Pathol       Date:  2012-12-06       Impact factor: 1.902

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