Literature DB >> 10959632

Pressure effect on the dynamics of an isolated alpha-helix studied by 15N-1H NMR relaxation.

V Y Orekhov1, P V Dubovskii, H Yamada, K Akasaka, A S Arseniev.   

Abstract

Dynamics and structure of (1-36)bacteriorhodopsin solubilized in chloroform/methanol mixture (1:1) were investigated by 1H-15N NMR spectroscopy under a hydrostatic pressure of 2000 bar. It was shown that the peptide retains its spatial structure at high pressure. 15N transverse and longitudinal relaxation times, 15N[1H] nuclear Overhauser effects, chemical shifts and the translation diffusion rate of the peptide at 2000 bar were compared with the respective data at ambient pressure [Orekhov et al. (1999) J. Biomol. NMR, 14, 345-356]. The model free analysis of the relaxation data for the helical 9-31 fragment revealed that the high pressure decreases the overall rotation and translation diffusion, as well as apparent order parameters of fast picosecond internal motions (S2) but has no effect on internal nanosecond motions (S2 and taus) of the peptide. The decrease of translation and overall rotation diffusion was attributed to the increase in solvent viscosity and the decrease of apparent order parameters S2f to a compression of hydrogen bonds. It is suggested that this compression causes an elongation of H-N bonds and a decrease of absolute values of chemical shift anisotropy (CSA). In particular, the observed decrease of S2f at 2000 bar can be explained by 0.001 nm increase of N-H bond lengths and 10 ppm decrease of 15N CSA values.

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Year:  2000        PMID: 10959632     DOI: 10.1023/a:1008346414720

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  30 in total

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5.  Model-free approach beyond the borders of its applicability.

Authors:  D M Korzhnev; V Y Orekhov; A S Arseniev
Journal:  J Magn Reson       Date:  1997-08       Impact factor: 2.229

6.  Pressure response of protein backbone structure. Pressure-induced amide 15N chemical shifts in BPTI.

Authors:  K Akasaka; H Li; H Yamada; R Li; T Thoresen; C K Woodward
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

7.  High-pressure proton nuclear magnetic resonance studies of hemoproteins. Pressure-induced structural change in heme environments of myoglobin, hemoglobin, and horseradish peroxidase.

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8.  1H, 13C and 15N chemical shift referencing in biomolecular NMR.

Authors:  D S Wishart; C G Bigam; J Yao; F Abildgaard; H J Dyson; E Oldfield; J L Markley; B D Sykes
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9.  Backbone 1H and 15N resonance assignments of the N-terminal SH3 domain of drk in folded and unfolded states using enhanced-sensitivity pulsed field gradient NMR techniques.

Authors:  O Zhang; L E Kay; J P Olivier; J D Forman-Kay
Journal:  J Biomol NMR       Date:  1994-11       Impact factor: 2.835

10.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

Authors:  N A Farrow; R Muhandiram; A U Singer; S M Pascal; C M Kay; G Gish; S E Shoelson; T Pawson; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

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  7 in total

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Authors:  Marie Galloux; Sonia Libersou; Isabel D Alves; Rodrigue Marquant; Gilmar F Salgado; Human Rezaei; Jean Lepault; Bernard Delmas; Serge Bouaziz; Nelly Morellet
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3.  Pressure-stability of phospholipid bicelles: measurement of residual dipolar couplings under extreme conditions.

Authors:  E Brunner; M R Arnold; W Kremer; H R Kalbitzer
Journal:  J Biomol NMR       Date:  2001-10       Impact factor: 2.835

4.  Pressure response of amide one-bond J-couplings in model peptides and proteins.

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5.  Quantitative evaluation of positive ϕ angle propensity in flexible regions of proteins from three-bond J couplings.

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Journal:  Phys Chem Chem Phys       Date:  2016-02-17       Impact factor: 3.676

6.  Impact of hydrostatic pressure on an intrinsically disordered protein: a high-pressure NMR study of α-synuclein.

Authors:  Julien Roche; Jinfa Ying; Alexander S Maltsev; Ad Bax
Journal:  Chembiochem       Date:  2013-06-28       Impact factor: 3.164

7.  Pressure-dependent 13C chemical shifts in proteins: origins and applications.

Authors:  David J Wilton; Ryo Kitahara; Kazuyuki Akasaka; Mike P Williamson
Journal:  J Biomol NMR       Date:  2009-03-24       Impact factor: 2.835

  7 in total

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