Literature DB >> 9254626

Partial volumes and compressibilities of extended polypeptide chains in aqueous solution: additivity scheme and implication of protein unfolding at normal and high pressure.

D P Kharakoz1.   

Abstract

An empirical additivity method for calculation of the partial volumes and adiabatic compressibilities of extended oligo- and polypeptides having arbitrary amino acid compositions has been developed and tested by comparison with available experimental data. Its accuracy is the best among the known empirical approaches. Comparison of experimental data on protein denaturation with the results of calculation allows one to discriminate between the unfolded and molten globule states of globular proteins and to estimate the extent of unfolding. For the first time, experimental nonlinear data for the volume-pressure relationship in proteins and model compounds have been used to interpret the high-pressure denaturation of proteins. It has been shown that the two denatured states, molten globule and unfolded ones, can be attained by a pressure rise: the molten globule state by moderate pressure and the unfolded one by high pressure. The relationship between volumetric properties and hydration is briefly discussed.

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Year:  1997        PMID: 9254626     DOI: 10.1021/bi961781c

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  30 in total

1.  Polar side chains drive the association of model transmembrane peptides.

Authors:  H Gratkowski; J D Lear; W F DeGrado
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

Review 2.  Protein compressibility, dynamics, and pressure.

Authors:  D P Kharakoz
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

3.  A polar, solvent-exposed residue can be essential for native protein structure.

Authors:  R B Hill; W F DeGrado
Journal:  Structure       Date:  2000-05-15       Impact factor: 5.006

4.  Oligomerization of the integrin alphaIIbbeta3: roles of the transmembrane and cytoplasmic domains.

Authors:  R Li; C R Babu; J D Lear; A J Wand; J S Bennett; W F DeGrado
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-16       Impact factor: 11.205

5.  Hydration and protein folding in water and in reverse micelles: compressibility and volume changes.

Authors:  D Valdez; J Y Le Huérou; M Gindre; W Urbach; M Waks
Journal:  Biophys J       Date:  2001-06       Impact factor: 4.033

6.  Dynamic transition associated with the thermal denaturation of a small Beta protein.

Authors:  Daniela Russo; Javier Pérez; Jean-Marc Zanotti; Michel Desmadril; Dominique Durand
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

7.  Computational design of a water-soluble analog of phospholamban.

Authors:  Avram M Slovic; Christopher M Summa; James D Lear; William F DeGrado
Journal:  Protein Sci       Date:  2003-02       Impact factor: 6.725

8.  Cooperativity and specificity of association of a designed transmembrane peptide.

Authors:  Holly Gratkowski; Qing-Hong Dai; A Joshua Wand; William F DeGrado; James D Lear
Journal:  Biophys J       Date:  2002-09       Impact factor: 4.033

9.  Design of amphiphilic protein maquettes: controlling assembly, membrane insertion, and cofactor interactions.

Authors:  Bohdana M Discher; Dror Noy; Joseph Strzalka; Shixin Ye; Christopher C Moser; James D Lear; J Kent Blasie; P Leslie Dutton
Journal:  Biochemistry       Date:  2005-09-20       Impact factor: 3.162

10.  Acid destabilization of the solution conformation of Bcl-xL does not drive its pH-dependent insertion into membranes.

Authors:  Guruvasuthevan R Thuduppathy; R Blake Hill
Journal:  Protein Sci       Date:  2005-12-29       Impact factor: 6.725

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