Literature DB >> 10723997

Long-range imino proton-13C J-couplings and the through-bond correlation of imino and non-exchangeable protons in unlabeled DNA.

A T Phan1.   

Abstract

Thanks to rather large (5-9 Hz) long-range imino proton-13C J-couplings, heteronuclear correlation experiments in H2O provide unambiguous assignment of imino protons by intranucleotide through-bond connectivities to guanosine H8 and thymidine CH3 protons, or sequence-specific assignment of non-exchangeable protons when the imino protons are identified independently. This method is demonstrated in the Dickerson dodecamer [d(CGCGAATTCGCG)]2 and in a human telomeric fragment of 22 nucleotides.

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Year:  2000        PMID: 10723997     DOI: 10.1023/a:1008355231085

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  10 in total

1.  Triple-resonance experiments for correlation of H5 and exchangeable pyrimidine base hydrogens in (13)C,(15)N-labeled RNA.

Authors:  J Wöhnert; R Ramachandran; M Görlach; L R Brown
Journal:  J Magn Reson       Date:  1999-08       Impact factor: 2.229

2.  Heteronuclear NMR of DNA with the heteronucleus in natural abundance: facilitated assignment and extraction of coupling constants.

Authors:  P Schmieder; J H Ippel; H van den Elst; G A van der Marel; J H van Boom; C Altona; H Kessler
Journal:  Nucleic Acids Res       Date:  1992-09-25       Impact factor: 16.971

3.  Through-bond correlation of imino and aromatic resonances in 13C-, 15N-labeled RNA via heteronuclear TOCSY.

Authors:  V Sklenár; T Dieckmann; S E Butcher; J Feigon
Journal:  J Biomol NMR       Date:  1996-01       Impact factor: 2.835

4.  Through-bond correlation of adenine H2 and H8 protons in unlabeled DNA fragments by HMBC spectroscopy.

Authors:  M J van Dongen; S S Wijmenga; R Eritja; F Azorín; C W Hilbers
Journal:  J Biomol NMR       Date:  1996-09       Impact factor: 2.835

5.  Assignment of NH resonances in nucleic acids using natural abundance 15N-1H correlation spectroscopy with spin-echo and gradient pulses.

Authors:  A A Szewczak; G W Kellogg; P B Moore
Journal:  FEBS Lett       Date:  1993-08-02       Impact factor: 4.124

6.  15N-edited three-dimensional NOESY-HMQC with water flipback: enhancement of weak labile 1H resonances of protein side chains contacting DNA.

Authors:  J M Gruschus; J A Ferretti
Journal:  J Magn Reson       Date:  1998-11       Impact factor: 2.229

7.  Nitrogen-15-labeled yeast tRNAPhe: double and two-dimensional heteronuclear NMR of guanosine and uracil ring NH groups.

Authors:  S Roy; M Z Papastavros; V Sanchez; A G Redfield
Journal:  Biochemistry       Date:  1984-09-11       Impact factor: 3.162

8.  Triple resonance HNCCCH experiments for correlating exchangeable and nonexchangeable cytidine and uridine base protons in RNA.

Authors:  J P Simorre; G R Zimmermann; A Pardi; B T Farmer; L Mueller
Journal:  J Biomol NMR       Date:  1995-12       Impact factor: 2.835

9.  Correlation of nucleotide base and sugar protons in a 15N-labeled HIV-1 RNA oligonucleotide by 1H-15N HSQC experiments.

Authors:  V Sklenár; R D Peterson; M R Rejante; J Feigon
Journal:  J Biomol NMR       Date:  1994-01       Impact factor: 2.835

10.  Correlation of the guanosine exchangeable and nonexchangeable base protons in 13C-/15N-labeled RNA with an HNC-TOCSY-CH experiment.

Authors:  J P Simorre; G R Zimmermann; L Mueller; A Pardi
Journal:  J Biomol NMR       Date:  1996-03       Impact factor: 2.835

  10 in total
  44 in total

1.  Two-repeat human telomeric d(TAGGGTTAGGGT) sequence forms interconverting parallel and antiparallel G-quadruplexes in solution: distinct topologies, thermodynamic properties, and folding/unfolding kinetics.

Authors:  Anh Tuân Phan; Dinshaw J Patel
Journal:  J Am Chem Soc       Date:  2003-12-10       Impact factor: 15.419

2.  Two-repeat Tetrahymena telomeric d(TGGGGTTGGGGT) Sequence interconverts between asymmetric dimeric G-quadruplexes in solution.

Authors:  Anh Tuân Phan; Yasha S Modi; Dinshaw J Patel
Journal:  J Mol Biol       Date:  2004-04-16       Impact factor: 5.469

3.  Overlapping but distinct: a new model for G-quadruplex biochemical specificity.

Authors:  Martin Volek; Sofia Kolesnikova; Katerina Svehlova; Pavel Srb; Ráchel Sgallová; Tereza Streckerová; Juan A Redondo; Václav Veverka; Edward A Curtis
Journal:  Nucleic Acids Res       Date:  2021-02-26       Impact factor: 16.971

4.  (3 + 1) Assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex.

Authors:  Na Zhang; Anh Tuân Phan; Dinshaw J Patel
Journal:  J Am Chem Soc       Date:  2005-12-14       Impact factor: 15.419

5.  Structure of an unprecedented G-quadruplex scaffold in the human c-kit promoter.

Authors:  Anh Tuân Phan; Vitaly Kuryavyi; Sarah Burge; Stephen Neidle; Dinshaw J Patel
Journal:  J Am Chem Soc       Date:  2007-03-16       Impact factor: 15.419

6.  Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter.

Authors:  Anh Tuân Phan; Yasha S Modi; Dinshaw J Patel
Journal:  J Am Chem Soc       Date:  2004-07-21       Impact factor: 15.419

7.  Experiments for correlating quaternary carbons in RNA bases.

Authors:  Radovan Fiala; Markéta L Munzarová; Vladimír Sklenár
Journal:  J Biomol NMR       Date:  2004-08       Impact factor: 2.835

8.  Solution structures of all parallel-stranded monomeric and dimeric G-quadruplex scaffolds of the human c-kit2 promoter.

Authors:  Vitaly Kuryavyi; Anh Tuân Phan; Dinshaw J Patel
Journal:  Nucleic Acids Res       Date:  2010-06-21       Impact factor: 16.971

9.  Sequence variant (CTAGGG)n in the human telomere favors a G-quadruplex structure containing a G.C.G.C tetrad.

Authors:  Kah Wai Lim; Patrizia Alberti; Aurore Guédin; Laurent Lacroix; Jean-François Riou; Nicola J Royle; Jean-Louis Mergny; Anh Tuân Phan
Journal:  Nucleic Acids Res       Date:  2009-08-19       Impact factor: 16.971

10.  A novel chair-type G-quadruplex formed by a Bombyx mori telomeric sequence.

Authors:  Samir Amrane; Rita Wan Lin Ang; Zhong Ming Tan; Chun Li; Joefina Kim Cheow Lim; Jocelyn Mei Wen Lim; Kah Wai Lim; Anh Tuân Phan
Journal:  Nucleic Acids Res       Date:  2008-12-22       Impact factor: 16.971

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