Literature DB >> 10611301

Pressure-induced protein-folding/unfolding kinetics.

N Hillson1, J N Onuchic, A E García.   

Abstract

We use an off-lattice minimalist model to describe the effects of pressure in slowing down the folding/unfolding kinetics of proteins when subjected to increasingly larger pressures. The potential energy function used to describe the interactions between beads in the model includes the effects of pressure on the pairwise interaction of hydrophobic groups in water. We show that pressure affects the participation of contacts in the transition state. More significantly, pressure exponentially decreases the chain reconfigurational diffusion coefficient. These results are consistent with experimental results on the kinetics of pressure-denaturation of staphylococcal nuclease.

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Year:  1999        PMID: 10611301      PMCID: PMC24736          DOI: 10.1073/pnas.96.26.14848

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  17 in total

1.  First-Order Disorder-to-Order Transition in an Isolated Homopolymer Model.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-09-23       Impact factor: 9.161

2.  Thermodynamics of protein folding: a statistical mechanical study of a small all-beta protein.

Authors:  Z Guo; C L Brooks
Journal:  Biopolymers       Date:  1997-12       Impact factor: 2.505

3.  Molecular dynamics simulation of solvated protein at high pressure.

Authors:  D B Kitchen; L H Reed; R M Levy
Journal:  Biochemistry       Date:  1992-10-20       Impact factor: 3.162

Review 4.  Cold denaturation of proteins.

Authors:  P L Privalov
Journal:  Crit Rev Biochem Mol Biol       Date:  1990       Impact factor: 8.250

5.  Pressure-induced crossover from good to poor solvent behavior for polyethylene oxide in water.

Authors: 
Journal:  Phys Rev Lett       Date:  1992-11-23       Impact factor: 9.161

6.  Protein folding mechanisms and the multidimensional folding funnel.

Authors:  N D Socci; J N Onuchic; P G Wolynes
Journal:  Proteins       Date:  1998-08-01

7.  Proposed mechanism for stability of proteins to evolutionary mutations.

Authors:  E D Nelson; J N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-01       Impact factor: 11.205

8.  The pressure dependence of hydrophobic interactions is consistent with the observed pressure denaturation of proteins.

Authors:  G Hummer; S Garde; A E García; M E Paulaitis; L R Pratt
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-17       Impact factor: 11.205

9.  The kinetic basis for the stabilization of staphylococcal nuclease by xylose.

Authors:  K J Frye; C A Royer
Journal:  Protein Sci       Date:  1997-04       Impact factor: 6.725

10.  Effect of hydrostatic pressure on the solvent in crystals of hen egg-white lysozyme.

Authors:  C E Kundrot; F M Richards
Journal:  J Mol Biol       Date:  1988-03-20       Impact factor: 5.469

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  16 in total

1.  Protein folding mediated by solvation: water expulsion and formation of the hydrophobic core occur after the structural collapse.

Authors:  Margaret S Cheung; Angel E García; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-22       Impact factor: 11.205

2.  Folding a protein in a computer: an atomic description of the folding/unfolding of protein A.

Authors:  Angel E García; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-17       Impact factor: 11.205

3.  Effects of pressure on the dynamics of an oligomeric protein from deep-sea hyperthermophile.

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Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-26       Impact factor: 11.205

4.  Chevron behavior and isostable enthalpic barriers in protein folding: successes and limitations of simple Gō-like modeling.

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5.  Hydration of the folding transition state ensemble of a protein.

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6.  Temperature and pressure dependence of protein stability: the engineered fluorescein-binding lipocalin FluA shows an elliptic phase diagram.

Authors:  Johannes Wiedersich; Simone Köhler; Arne Skerra; Josef Friedrich
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-07       Impact factor: 11.205

7.  Critical phenomena in the temperature-pressure-crowding phase diagram of a protein.

Authors:  Andrei G Gasic; Mayank M Boob; Maxim B Prigozhin; Dirar Homouz; Anna Jean Wirth; Caleb M Daugherty; Martin Gruebele; Margaret S Cheung
Journal:  Phys Rev X       Date:  2019-11-18       Impact factor: 15.762

8.  High-Pressure-Driven Reversible Dissociation of α-Synuclein Fibrils Reveals Structural Hierarchy.

Authors:  Federica Piccirilli; Nicoletta Plotegher; Maria Grazia Ortore; Isabella Tessari; Marco Brucale; Francesco Spinozzi; Mariano Beltramini; Paolo Mariani; Valeria Militello; Stefano Lupi; Andrea Perucchi; Luigi Bubacco
Journal:  Biophys J       Date:  2017-10-17       Impact factor: 4.033

9.  Solvation in protein folding analysis: combination of theoretical and experimental approaches.

Authors:  A M Fernández-Escamilla; M S Cheung; M C Vega; M Wilmanns; J N Onuchic; L Serrano
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-20       Impact factor: 11.205

10.  Accelerating Enzymatic Catalysis Using Vortex Fluidics.

Authors:  Joshua Britton; Luz M Meneghini; Colin L Raston; Gregory A Weiss
Journal:  Angew Chem Int Ed Engl       Date:  2016-08-05       Impact factor: 15.336

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