Literature DB >> 9724764

Proposed mechanism for stability of proteins to evolutionary mutations.

E D Nelson1, J N Onuchic.   

Abstract

It is shown that the sequence-ordering tendencies induced by design into different fast-folding, thermally stable native structures interfere. This interference results in a type of quasiorthogonality between optimal native structures, which divides sequence space into fast-folding, thermally stable families surrounded by slow-folding, low stability shells. A concrete example of this effect is provided by using a simple alpha carbon type model in which a complete correspondence is established between sequence and structure. It is speculated that gaps can occur in the space of protein-like sequences separating the sequence families and resulting in a mechanism for stability and diversity of protein sequence information.

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Year:  1998        PMID: 9724764      PMCID: PMC27955          DOI: 10.1073/pnas.95.18.10682

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

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Review 3.  Transmuting alpha helices and beta sheets.

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6.  First-principles calculation of the folding free energy of a three-helix bundle protein.

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Journal:  Science       Date:  1995-07-21       Impact factor: 47.728

7.  Toward an outline of the topography of a realistic protein-folding funnel.

Authors:  J N Onuchic; P G Wolynes; Z Luthey-Schulten; N D Socci
Journal:  Proc Natl Acad Sci U S A       Date:  1995-04-11       Impact factor: 11.205

8.  Kinetics of protein folding. A lattice model study of the requirements for folding to the native state.

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Journal:  Proc Natl Acad Sci U S A       Date:  1982-04       Impact factor: 11.205

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Authors:  J D Bryngelson; P G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  1987-11       Impact factor: 11.205

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  10 in total

1.  Modeling evolutionary landscapes: mutational stability, topology, and superfunnels in sequence space.

Authors:  E Bornberg-Bauer; H S Chan
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-14       Impact factor: 11.205

2.  How native-state topology affects the folding of dihydrofolate reductase and interleukin-1beta.

Authors:  C Clementi; P A Jennings; J N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-23       Impact factor: 11.205

3.  Pressure-induced protein-folding/unfolding kinetics.

Authors:  N Hillson; J N Onuchic; A E García
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

4.  Exploring the origins of topological frustration: design of a minimally frustrated model of fragment B of protein A.

Authors:  J E Shea; J N Onuchic; C L Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

5.  Recombinatoric exploration of novel folded structures: a heteropolymer-based model of protein evolutionary landscapes.

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6.  Universal distribution of protein evolution rates as a consequence of protein folding physics.

Authors:  Alexander E Lobkovsky; Yuri I Wolf; Eugene V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-26       Impact factor: 11.205

7.  An insight into the molecular basis of salt tolerance of L-myo-inositol 1-P synthase (PcINO1) from Porteresia coarctata (Roxb.) Tateoka, a halophytic wild rice.

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8.  Evolutionary Stability of Salt Bridges Hints Its Contribution to Stability of Proteins.

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9.  Relating SARS-CoV-2 variants using cellular automata imaging.

Authors:  Luryane F Souza; Tarcísio M Rocha Filho; Marcelo A Moret
Journal:  Sci Rep       Date:  2022-06-18       Impact factor: 4.996

10.  Understanding the Physical and Molecular Basis of Stability of Arabidopsis DNA Pol λ under UV-B and High NaCl Stress.

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Journal:  PLoS One       Date:  2015-07-31       Impact factor: 3.240

  10 in total

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