Literature DB >> 3373535

Effect of hydrostatic pressure on the solvent in crystals of hen egg-white lysozyme.

C E Kundrot1, F M Richards.   

Abstract

The mass density of protein crystals can be measured in Ficoll gradients as a function of hydrostatic pressure. Carbon tetrachloride-toluene mixtures provide convenient density markers, and the compressibility of these standards is reported. Measurements on tetragonal crystals of hen egg-white lysozyme yielded densities at room temperature of 1.2367(+/- 0.0010) g cm-3 at 1 atm and 1.2586(+/- 0.0017) g cm-3 at 1000 atm (1 atm = 101,325 Pa). When combined with the unit cell dimensions at these two pressures these values lead to an estimated compression (fractional change in volume) of the crystal solvent at 1000 atm of 0.0369(+/- 0.0054). This value is comparable to that of a 0.7 M solution of NaCl. From an approximate estimate of the Donnan effect for the crystal in the 1.4 M-NaCl mother liquor, the crystal solvent contains 0.8 M-Na+ and 2.5 M-Cl-. It is concluded that the compressibility of solvent in lysozyme crystals is, within experimental error, the same as bulk solvent and does not exhibit the dramatically altered compressibility expected of an ice or glass-like solid. The crystallographically observable water sites, 151 at 1 atm and 163 at 1000 atm, showed a tendency to increase the number of hydrogen bonds made to other water sites at the expense of hydrogen bonds made to protein. The explanation for this phenomenon is presently unknown. Water sites that occur in both structures tend to have comparable temperature factors and show some tendency to follow the pressure-induced changes in protein atom positions. The compression expected for the water molecules themselves is too small to be observable at the resolution of the X-ray data collected in this study.

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Year:  1988        PMID: 3373535     DOI: 10.1016/0022-2836(88)90249-5

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  10 in total

1.  Pressure-induced protein-folding/unfolding kinetics.

Authors:  N Hillson; J N Onuchic; A E García
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

2.  The pressure dependence of hydrophobic interactions is consistent with the observed pressure denaturation of proteins.

Authors:  G Hummer; S Garde; A E García; M E Paulaitis; L R Pratt
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-17       Impact factor: 11.205

3.  Antagonistic effects of hydrostatic pressure and osmotic pressure on cytochrome P-450cam spin transition.

Authors:  C Di Primo; E Deprez; G H Hoa; P Douzou
Journal:  Biophys J       Date:  1995-05       Impact factor: 4.033

4.  Effects of pressure on equatorial x-ray fiber diffraction from skeletal muscle fibers.

Authors:  P J Knight; N S Fortune; M A Geeves
Journal:  Biophys J       Date:  1993-08       Impact factor: 4.033

5.  15N and 1H NMR study of histidine containing protein (HPr) from Staphylococcus carnosus at high pressure.

Authors:  H R Kalbitzer; A Görler; H Li; P V Dubovskii; W Hengstenberg; C Kowolik; H Yamada; K Akasaka
Journal:  Protein Sci       Date:  2000-04       Impact factor: 6.725

6.  Insights into folate/FAD-dependent tRNA methyltransferase mechanism: role of two highly conserved cysteines in catalysis.

Authors:  Djemel Hamdane; Manuela Argentini; David Cornu; Hannu Myllykallio; Stéphane Skouloubris; Gaston Hui-Bon-Hoa; Béatrice Golinelli-Pimpaneau
Journal:  J Biol Chem       Date:  2011-08-16       Impact factor: 5.157

7.  Enhanced crystal packing due to solvent reorganization through reductive methylation of lysine residues in oxidoreductase from Streptococcus pneumoniae.

Authors:  Yao Fan; Andrzej Joachimiak
Journal:  J Struct Funct Genomics       Date:  2010-02-02

8.  Responses of two protein-protein complexes to solvent stress: does water play a role at the interface?

Authors:  J A Kornblatt; M J Kornblatt; G H Hoa; A G Mauk
Journal:  Biophys J       Date:  1993-09       Impact factor: 4.033

9.  Practical aspects of high-pressure NMR spectroscopy and its applications in protein biophysics and structural biology.

Authors:  José A Caro; A Joshua Wand
Journal:  Methods       Date:  2018-06-30       Impact factor: 3.608

10.  Three-dimensional structure of the platelet integrin recognition segment of the fibrinogen gamma chain obtained by carrier protein-driven crystallization.

Authors:  J P Donahue; H Patel; W F Anderson; J Hawiger
Journal:  Proc Natl Acad Sci U S A       Date:  1994-12-06       Impact factor: 11.205

  10 in total

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