Literature DB >> 27493015

Accelerating Enzymatic Catalysis Using Vortex Fluidics.

Joshua Britton1,2, Luz M Meneghini3, Colin L Raston4, Gregory A Weiss5,6.   

Abstract

Enzymes catalyze chemical transformations with outstanding stereo- and regio-specificities, but many enzymes are limited by their long reaction times. A general method to accelerate enzymes using pressure waves contained within thin films is described. Each enzyme responds best to specific frequencies of pressure waves, and an acceleration landscape for each protein is reported. A vortex fluidic device introduces pressure waves that drive increased rate constants (kcat ) and enzymatic efficiency (kcat /Km ). Four enzymes displayed an average seven-fold acceleration, with deoxyribose-5-phosphate aldolase (DERA) achieving an average 15-fold enhancement using this approach. In solving a common problem in enzyme catalysis, a powerful, generalizable tool for enzyme acceleration has been uncovered. This research provides new insights into previously uncontrolled factors affecting enzyme function.
© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  aldolases; biocatalysis; enzyme acceleration; hydrolases; vortex fluidics

Mesh:

Substances:

Year:  2016        PMID: 27493015      PMCID: PMC5524626          DOI: 10.1002/anie.201604014

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  20 in total

1.  Pressure-induced protein-folding/unfolding kinetics.

Authors:  N Hillson; J N Onuchic; A E García
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

Review 2.  The depth of chemical time and the power of enzymes as catalysts.

Authors:  R Wolfenden; M J Snider
Journal:  Acc Chem Res       Date:  2001-12       Impact factor: 22.384

Review 3.  Superefficient enzymes.

Authors:  M E Stroppolo; M Falconi; A M Caccuri; A Desideri
Journal:  Cell Mol Life Sci       Date:  2001-09       Impact factor: 9.261

4.  Good vibrations in enzyme-catalysed reactions.

Authors:  Sam Hay; Nigel S Scrutton
Journal:  Nat Chem       Date:  2012-01-29       Impact factor: 24.427

Review 5.  Biocatalysis for pharmaceutical intermediates: the future is now.

Authors:  David J Pollard; John M Woodley
Journal:  Trends Biotechnol       Date:  2006-12-20       Impact factor: 19.536

Review 6.  Expanding the enzyme universe: accessing non-natural reactions by mechanism-guided directed evolution.

Authors:  Hans Renata; Z Jane Wang; Frances H Arnold
Journal:  Angew Chem Int Ed Engl       Date:  2015-02-03       Impact factor: 15.336

Review 7.  Industrial applications of enzyme biocatalysis: Current status and future aspects.

Authors:  Jung-Min Choi; Sang-Soo Han; Hak-Sung Kim
Journal:  Biotechnol Adv       Date:  2015-03-06       Impact factor: 14.227

8.  Rapid Vortex Fluidics: Continuous Flow Synthesis of Amides and Local Anesthetic Lidocaine.

Authors:  Joshua Britton; Justin M Chalker; Colin L Raston
Journal:  Chemistry       Date:  2015-06-19       Impact factor: 5.236

9.  Development of an efficient, scalable, aldolase-catalyzed process for enantioselective synthesis of statin intermediates.

Authors:  William A Greenberg; Alexander Varvak; Sarah R Hanson; Kelvin Wong; Hongjun Huang; Pei Chen; Mark J Burk
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-06       Impact factor: 11.205

10.  Electronic measurements of single-molecule catalysis by cAMP-dependent protein kinase A.

Authors:  Patrick C Sims; Issa S Moody; Yongki Choi; Chengjun Dong; Mariam Iftikhar; Brad L Corso; O Tolga Gul; Philip G Collins; Gregory A Weiss
Journal:  J Am Chem Soc       Date:  2013-05-14       Impact factor: 15.419

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  10 in total

1.  Ten-Minute Protein Purification and Surface Tethering for Continuous-Flow Biocatalysis.

Authors:  Joshua Britton; Rebekah P Dyer; Sudipta Majumdar; Colin L Raston; Gregory A Weiss
Journal:  Angew Chem Int Ed Engl       Date:  2017-01-30       Impact factor: 15.336

Review 2.  Vortex Fluidic Chemical Transformations.

Authors:  Joshua Britton; Keith A Stubbs; Gregory A Weiss; Colin L Raston
Journal:  Chemistry       Date:  2017-08-16       Impact factor: 5.236

3.  Vortex fluidic mediated encapsulation of functional fish oil featuring in situ probed small angle neutron scattering.

Authors:  Shan He; Nikita Joseph; Marzieh Mirzamani; Scott J Pye; Ahmed Hussein Mohammed Al-Anataki; Andrew E Whitten; Yaonan Chen; Harshita Kumari; Colin L Raston
Journal:  NPJ Sci Food       Date:  2020-09-09

4.  Radical Hydrodehalogenation of Aryl Bromides and Chlorides with Sodium Hydride and 1,4-Dioxane.

Authors:  Tobias Hokamp; Abhishek Dewanji; Maximilian Lübbesmeyer; Christian Mück-Lichtenfeld; Ernst-Ulrich Würthwein; Armido Studer
Journal:  Angew Chem Int Ed Engl       Date:  2017-09-19       Impact factor: 15.336

5.  Vortex fluidic mediated food processing.

Authors:  Shan He; Nikita Joseph; Xuan Luo; Colin L Raston
Journal:  PLoS One       Date:  2019-05-30       Impact factor: 3.240

6.  Neutron imaging and modelling inclined vortex driven thin films.

Authors:  Timothy E Solheim; Filomena Salvemini; Stuart B Dalziel; Colin L Raston
Journal:  Sci Rep       Date:  2019-02-26       Impact factor: 4.379

7.  Vortex fluidics-mediated DNA rescue from formalin-fixed museum specimens.

Authors:  Christian A Totoiu; Jessica M Phillips; Aspen T Reese; Sudipta Majumdar; Peter R Girguis; Colin L Raston; Gregory A Weiss
Journal:  PLoS One       Date:  2020-01-30       Impact factor: 3.240

8.  Vortex Fluidic Mediated Oxidative Sulfitolysis of Oxytocin.

Authors:  Emily M Crawley; Scott Pye; Briony E Forbes; Colin L Raston
Journal:  Molecules       Date:  2022-02-07       Impact factor: 4.411

9.  Sub-micron moulding topological mass transport regimes in angled vortex fluidic flow.

Authors:  Thaar M D Alharbi; Matt Jellicoe; Xuan Luo; Kasturi Vimalanathan; Ibrahim K Alsulami; Bediea S Al Harbi; Aghil Igder; Fayed A J Alrashaidi; Xianjue Chen; Keith A Stubbs; Justin M Chalker; Wei Zhang; Ramiz A Boulos; Darryl B Jones; Jamie S Quinton; Colin L Raston
Journal:  Nanoscale Adv       Date:  2021-04-28

10.  Conformational Sampling of the Intrinsically Disordered C-Terminal Tail of DERA Is Important for Enzyme Catalysis.

Authors:  Marianne Schulte; Dušan Petrović; Philipp Neudecker; Rudolf Hartmann; Jörg Pietruszka; Sabine Willbold; Dieter Willbold; Vineet Panwalkar
Journal:  ACS Catal       Date:  2018-03-27       Impact factor: 13.084

  10 in total

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