Literature DB >> 18391216

Temperature and pressure dependence of protein stability: the engineered fluorescein-binding lipocalin FluA shows an elliptic phase diagram.

Johannes Wiedersich1, Simone Köhler, Arne Skerra, Josef Friedrich.   

Abstract

We have measured the equilibrium constant for the denaturation transition of the engineered fluorescein-binding lipocalin FluA as a function of pressure and temperature, taking advantage of the fact that the ligand's fluorescence is almost fully quenched when complexed with the folded protein, but reversibly reappears on denaturation. From the equilibrium constant as a function of pressure and temperature all of the involved thermodynamic parameters of protein folding, in particular the changes in entropy and volume, compressibility, thermal expansion, and specific heat, were deduced in a global fitting procedure. Assuming that these parameters are independent of temperature and pressure, we can demonstrate from the ratio of Deltabeta, Deltaalpha(2), DeltaC(p) that the phase diagram of protein folding assumes an elliptic shape. Furthermore, we can show that the thermodynamic condition for such an elliptic phase diagram is related to the degree of correlation between the fluctuations of the changes in volume and enthalpy at the phase boundary. For the protein investigated this correlation is low, as generally expected for highly degenerate systems. Our study suggests that the elliptic phase diagram is a consequence of the inherent conformational disorder of proteins and that it may be viewed as the thermodynamic manifestation of the high degeneracy of conformational energies that is characteristic for this class of macromolecules.

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Year:  2008        PMID: 18391216      PMCID: PMC2311345          DOI: 10.1073/pnas.0710409105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

1.  Pressure-induced protein-folding/unfolding kinetics.

Authors:  N Hillson; J N Onuchic; A E García
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

2.  Protein phase diagrams: the physics behind their elliptic shape.

Authors:  Harald Lesch; Christoph Hecht; Josef Friedrich
Journal:  J Chem Phys       Date:  2004-12-22       Impact factor: 3.488

3.  Reversible temperature and pressure denaturation of a protein fragment: a replica exchange molecular dynamics simulation study.

Authors:  Dietmar Paschek; Angel E García
Journal:  Phys Rev Lett       Date:  2004-12-02       Impact factor: 9.161

4.  Rational engineering of a fluorescein-binding anticalin for improved ligand affinity.

Authors:  Sven Vopel; Hermine Mühlbach; Arne Skerra
Journal:  Biol Chem       Date:  2005-11       Impact factor: 3.915

5.  Simulations of the pressure and temperature unfolding of an alpha-helical peptide.

Authors:  Dietmar Paschek; S Gnanakaran; Angel E Garcia
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-30       Impact factor: 11.205

6.  Heteropolymer collapse theory for protein folding in the pressure-temperature plane.

Authors:  Jason K Cheung; Pooja Shah; Thomas M Truskett
Journal:  Biophys J       Date:  2006-07-14       Impact factor: 4.033

7.  Mosaic energy landscapes of liquids and the control of protein conformational dynamics by glass-forming solvents.

Authors:  Vassiliy Lubchenko; Peter G Wolynes; Hans Frauenfelder
Journal:  J Phys Chem B       Date:  2005-04-21       Impact factor: 2.991

Review 8.  Protein structure and dynamics at high pressure.

Authors:  K Heremans; L Smeller
Journal:  Biochim Biophys Acta       Date:  1998-08-18

Review 9.  Proteins in electric fields and pressure fields: basic aspects.

Authors:  M Köhler; J Friedrich; J Fidy
Journal:  Biochim Biophys Acta       Date:  1998-08-18

10.  Small antibody-like proteins with prescribed ligand specificities derived from the lipocalin fold.

Authors:  G Beste; F S Schmidt; T Stibora; A Skerra
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-02       Impact factor: 11.205

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  11 in total

1.  The behavior of the hydrophobic effect under pressure and protein denaturation.

Authors:  J Raúl Grigera; Andres N McCarthy
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

2.  Unique features of the folding landscape of a repeat protein revealed by pressure perturbation.

Authors:  Jean-Baptiste Rouget; Martin A Schroer; Christoph Jeworrek; Matthias Pühse; Jean-Louis Saldana; Yannick Bessin; Metin Tolan; Doug Barrick; Roland Winter; Catherine A Royer
Journal:  Biophys J       Date:  2010-06-02       Impact factor: 4.033

3.  Why elliptical stability diagrams are not related to protein conformational disorder.

Authors:  Wolfgang Doster
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-30       Impact factor: 11.205

4.  Computing the stability diagram of the Trp-cage miniprotein.

Authors:  Dietmar Paschek; Sascha Hempel; Angel E García
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-12       Impact factor: 11.205

5.  Volume of Hsp90 ligand binding and the unfolding phase diagram as a function of pressure and temperature.

Authors:  Vytautas Petrauskas; Joana Gylytė; Zigmantas Toleikis; Piotras Cimmperman; Daumantas Matulis
Journal:  Eur Biophys J       Date:  2013-01-05       Impact factor: 1.733

6.  Effects of pressure and temperature on the binding of RecA protein to single-stranded DNA.

Authors:  Jack Merrin; Pradeep Kumar; Albert Libchaber
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-28       Impact factor: 11.205

7.  Polyubiquitin Drives the Molecular Interactions of the NF-κB Essential Modulator (NEMO) by Allosteric Regulation.

Authors:  Dragana A M Catici; James E Horne; Grace E Cooper; Christopher R Pudney
Journal:  J Biol Chem       Date:  2015-04-12       Impact factor: 5.157

8.  Glycine insertion makes yellow fluorescent protein sensitive to hydrostatic pressure.

Authors:  Tomonobu M Watanabe; Katsumi Imada; Keiko Yoshizawa; Masayoshi Nishiyama; Chiaki Kato; Fumiyoshi Abe; Takamitsu J Morikawa; Miki Kinoshita; Hideaki Fujita; Toshio Yanagida
Journal:  PLoS One       Date:  2013-08-27       Impact factor: 3.240

9.  Observation of complete pressure-jump protein refolding in molecular dynamics simulation and experiment.

Authors:  Yanxin Liu; Maxim B Prigozhin; Klaus Schulten; Martin Gruebele
Journal:  J Am Chem Soc       Date:  2014-02-03       Impact factor: 15.419

10.  Peptide cargo tunes a network of correlated motions in human leucocyte antigens.

Authors:  Jade R Hopkins; Rory M Crean; Dragana A M Catici; Andrew K Sewell; Vickery L Arcus; Marc W Van der Kamp; David K Cole; Christopher R Pudney
Journal:  FEBS J       Date:  2020-03-26       Impact factor: 5.622

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