Literature DB >> 10592169

Database resources of the National Center for Biotechnology Information.

D L Wheeler1, C Chappey, A E Lash, D D Leipe, T L Madden, G D Schuler, T A Tatusova, B A Rapp.   

Abstract

In addition to maintaining the GenBank(R) nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides data analysis and retrieval and resources that operate on the data in GenBank and a variety of other biological data made available through NCBI's Web site. NCBI data retrieval resources include Entrez, PubMed, LocusLink and the Taxonomy Browser. Data analysis resources include BLAST, Electronic PCR, OrfFinder, RefSeq, UniGene, Database of Single Nucleotide Polymorphisms (dbSNP), Human Genome Sequencing pages, GeneMap'99, Davis Human-Mouse Homology Map, Cancer Chromosome Aberration Project (CCAP) pages, Entrez Genomes, Clusters of Orthologous Groups (COGs) database, Retroviral Genotyping Tools, Cancer Genome Anatomy Project (CGAP) pages, SAGEmap, Online Mendelian Inheritance in Man (OMIM) and the Molecular Modeling Database (MMDB). Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. All of the resources can be accessed through the NCBI home page at: http://www.ncbi.nlm.nih. gov

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Year:  2000        PMID: 10592169      PMCID: PMC102437          DOI: 10.1093/nar/28.1.10

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  21 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  dbSNP: a database of single nucleotide polymorphisms.

Authors:  E M Smigielski; K Sirotkin; M Ward; S T Sherry
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  MMDB: 3D structure data in Entrez.

Authors:  Y Wang; K J Addess; L Geer; T Madej; A Marchler-Bauer; D Zimmerman; S H Bryant
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

4.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

5.  The COG database: a tool for genome-scale analysis of protein functions and evolution.

Authors:  R L Tatusov; M Y Galperin; D A Natale; E V Koonin
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

6.  MIPS: a database for genomes and protein sequences.

Authors:  H W Mewes; K Heumann; A Kaps; K Mayer; F Pfeiffer; S Stocker; D Frishman
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

Review 7.  A gene map of the human genome.

Authors:  G D Schuler; M S Boguski; E A Stewart; L D Stein; G Gyapay; K Rice; R E White; P Rodriguez-Tomé; A Aggarwal; E Bajorek; S Bentolila; B B Birren; A Butler; A B Castle; N Chiannilkulchai; A Chu; C Clee; S Cowles; P J Day; T Dibling; N Drouot; I Dunham; S Duprat; C East; C Edwards; J B Fan; N Fang; C Fizames; C Garrett; L Green; D Hadley; M Harris; P Harrison; S Brady; A Hicks; E Holloway; L Hui; S Hussain; C Louis-Dit-Sully; J Ma; A MacGilvery; C Mader; A Maratukulam; T C Matise; K B McKusick; J Morissette; A Mungall; D Muselet; H C Nusbaum; D C Page; A Peck; S Perkins; M Piercy; F Qin; J Quackenbush; S Ranby; T Reif; S Rozen; C Sanders; X She; J Silva; D K Slonim; C Soderlund; W L Sun; P Tabar; T Thangarajah; N Vega-Czarny; D Vollrath; S Voyticky; T Wilmer; X Wu; M D Adams; C Auffray; N A Walter; R Brandon; A Dehejia; P N Goodfellow; R Houlgatte; J R Hudson; S E Ide; K R Iorio; W Y Lee; N Seki; T Nagase; K Ishikawa; N Nomura; C Phillips; M H Polymeropoulos; M Sandusky; K Schmitt; R Berry; K Swanson; R Torres; J C Venter; J M Sikela; J S Beckmann; J Weissenbach; R M Myers; D R Cox; M R James; D Bentley; P Deloukas; E S Lander; T J Hudson
Journal:  Science       Date:  1996-10-25       Impact factor: 47.728

8.  Entrez: molecular biology database and retrieval system.

Authors:  G D Schuler; J A Epstein; H Ohkawa; J A Kans
Journal:  Methods Enzymol       Date:  1996       Impact factor: 1.600

Review 9.  Human/mouse homology relationships.

Authors:  R W DeBry; M F Seldin
Journal:  Genomics       Date:  1996-05-01       Impact factor: 5.736

10.  A breakpoint map of recurrent chromosomal rearrangements in human neoplasia.

Authors:  F Mitelman; F Mertens; B Johansson
Journal:  Nat Genet       Date:  1997-04       Impact factor: 38.330

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  170 in total

1.  GenBank.

Authors:  D A Benson; I Karsch-Mizrachi; D J Lipman; J Ostell; B A Rapp; D L Wheeler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  MMDB: 3D structure data in Entrez.

Authors:  Y Wang; K J Addess; L Geer; T Madej; A Marchler-Bauer; D Zimmerman; S H Bryant
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  BIND--The Biomolecular Interaction Network Database.

Authors:  G D Bader; I Donaldson; C Wolting; B F Ouellette; T Pawson; C W Hogue
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

4.  The European Large Subunit Ribosomal RNA Database.

Authors:  J Wuyts; P De Rijk; Y Van de Peer; T Winkelmans; R De Wachter
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

5.  The University of Minnesota Biocatalysis/Biodegradation Database: emphasizing enzymes.

Authors:  L B Ellis; C D Hershberger; E M Bryan; L P Wackett
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

6.  The PDB data uniformity project.

Authors:  T N Bhat; P Bourne; Z Feng; G Gilliland; S Jain; V Ravichandran; B Schneider; K Schneider; N Thanki; H Weissig; J Westbrook; H M Berman
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

7.  RECODE: a database of frameshifting, bypassing and codon redefinition utilized for gene expression.

Authors:  P V Baranov; O L Gurvich; O Fayet; M F Prère; W A Miller; R F Gesteland; J F Atkins; M C Giddings
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

8.  Assessment of clone identity and sequence fidelity for 1189 IMAGE cDNA clones.

Authors:  R G Halgren; M R Fielden; C J Fong; T R Zacharewski
Journal:  Nucleic Acids Res       Date:  2001-01-15       Impact factor: 16.971

9.  Mutations affecting the development of the peripheral nervous system in Drosophila: a molecular screen for novel proteins.

Authors:  S N Prokopenko; Y He; Y Lu; H J Bellen
Journal:  Genetics       Date:  2000-12       Impact factor: 4.562

10.  Links from genome proteins to known 3-D structures.

Authors:  Y Wang; S Bryant; R Tatusov; T Tatusova
Journal:  Genome Res       Date:  2000-10       Impact factor: 9.043

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