Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 The SBASE protein domain library, release 8.0: a collection of annotated protein sequence segments.

Literature DB >> 11125049

The SBASE protein domain library, release 8.0: a collection of annotated protein sequence segments.

J Murvai¹, K Vlahovicek, E Barta, S Pongor.

Abstract

SBASE 8.0 is the eighth release of the SBASE library of protein domain sequences that contains 294 898 annotated structural, functional, ligand-binding and topogenic segments of proteins, cross-referenced to most major sequence databases and sequence pattern collections. The entries are clustered into over 2005 statistically validated domain groups (SBASE-A) and 595 non-validated groups (SBASE-B), provided with several WWW-based search and browsing facilities for online use. A domain-search facility was developed, based on non-parametric pattern recognition methods, including artificial neural networks. SBASE 8.0 is freely available by anonymous 'ftp' file transfer from ftp.icgeb.trieste.it. Automated searching of SBASE can be carried out with the WWW servers http://www.icgeb.trieste.it/sbase/ and http://sbase.abc. hu/sbase/.

Mesh：

Substances：
Proteins

Year: 2001 PMID： 11125049 PMCID： PMC29838 DOI： 10.1093/nar/29.1.58

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

14 in total

1. The EMBL nucleotide sequence database.

Authors: W Baker; A van den Broek; E Camon; P Hingamp; P Sterk; G Stoesser; M A Tuli
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

2. ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons.

Authors: F Corpet; F Servant; J Gouzy; D Kahn
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

3. GenBank.

Authors: D A Benson; I Karsch-Mizrachi; D J Lipman; J Ostell; B A Rapp; D L Wheeler
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

4. The SBASE protein domain library, release 7.0: a collection of annotated protein sequence segments.

Authors: J Murvai; K Vlahovicek; E Barta; B Cataletto; S Pongor
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

5. PRINTS-S: the database formerly known as PRINTS.

Authors: T K Attwood; M D Croning; D R Flower; A P Lewis; J E Mabey; P Scordis; J N Selley; W Wright
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

6. The protein information resource (PIR).

Authors: W C Barker; J S Garavelli; H Huang; P B McGarvey; B C Orcutt; G Y Srinivasarao; C Xiao; L S Yeh; R S Ledley; J F Janda; F Pfeiffer; H W Mewes; A Tsugita; C Wu
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

7. The Pfam protein families database.

Authors: A Bateman; E Birney; R Durbin; S R Eddy; K L Howe; E L Sonnhammer
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

8. The domain-server: direct prediction of protein domain-homologies from BLAST search.

Authors: J Murvai; K Vlahovicek; E Barta; S Parthasarathy; H Hegyi; F Pfeiffer; S Pongor
Journal: Bioinformatics Date: 1999-04 Impact factor: 6.937

9. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

Authors: A Bairoch; R Apweiler
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

10. MIPS: a database for genomes and protein sequences.

Authors: H W Mewes; D Frishman; C Gruber; B Geier; D Haase; A Kaps; K Lemcke; G Mannhaupt; F Pfeiffer; C Schüller; S Stocker; B Weil
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

9 in total

1. The SBASE protein domain library, release 9.0: an online resource for protein domain identification.

Authors: Kristian Vlahovicek; János Murvai; Endre Barta; Sándor Pongor
Journal: Nucleic Acids Res Date: 2002-01-01 Impact factor: 16.971

2. Support vector machines for predicting membrane protein types by using functional domain composition.

Authors: Yu-Dong Cai; Guo-Ping Zhou; Kuo-Chen Chou
Journal: Biophys J Date: 2003-05 Impact factor: 4.033

3. A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0.

Authors: Kuo-Chen Chou; Hong-Bin Shen
Journal: PLoS One Date: 2010-04-01 Impact factor: 3.240

4. Plant-mPLoc: a top-down strategy to augment the power for predicting plant protein subcellular localization.

Authors: Kuo-Chen Chou; Hong-Bin Shen
Journal: PLoS One Date: 2010-06-28 Impact factor: 3.240

5. Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition.

Authors: Lei Chen; Kai-Yan Feng; Yu-Dong Cai; Kuo-Chen Chou; Hai-Peng Li
Journal: BMC Bioinformatics Date: 2010-05-31 Impact factor: 3.169