Literature DB >> 11125083

The European Large Subunit Ribosomal RNA Database.

J Wuyts1, P De Rijk, Y Van de Peer, T Winkelmans, R De Wachter.   

Abstract

The European Large Subunit Ribosomal RNA Database compiles all complete or nearly complete large subunit ribosomal RNA sequences available from public sequence databases. These are provided in aligned format and the secondary structure, as derived by comparative sequence analysis, is included. Additional information about the sequences such as literature references and taxonomic information is also included. The database is available from our WWW server at http://rrna.uia.ac.be/lsu/.

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Year:  2001        PMID： 11125083      PMCID： PMC29789          DOI： 10.1093/nar/29.1.175

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  7 in total

1.  The EMBL nucleotide sequence database.

Authors:  W Baker; A van den Broek; E Camon; P Hingamp; P Sterk; G Stoesser; M A Tuli
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.

Authors:  N Ban; P Nissen; J Hansen; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

3.  Database resources of the National Center for Biotechnology Information.

Authors:  D L Wheeler; C Chappey; A E Lash; D D Leipe; T L Madden; G D Schuler; T A Tatusova; B A Rapp
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

4.  DCSE, an interactive tool for sequence alignment and secondary structure research.

Authors:  P De Rijk; R De Wachter
Journal:  Comput Appl Biosci       Date:  1993-12

5.  RnaViz, a program for the visualisation of RNA secondary structure.

Authors:  P De Rijk; R De Wachter
Journal:  Nucleic Acids Res       Date:  1997-11-15       Impact factor: 16.971

6.  The evolution of stramenopiles and alveolates as derived by "substitution rate calibration" of small ribosomal subunit RNA.

Authors:  Y Van de Peer; G Van der Auwera; R De Wachter
Journal:  J Mol Evol       Date:  1996-02       Impact factor: 2.395

7.  Fourteen internal transcribed spacers in the circular ribosomal DNA of Euglena gracilis.

Authors:  M N Schnare; J R Cook; M W Gray
Journal:  J Mol Biol       Date:  1990-09-05       Impact factor: 5.469
  7 in total
  45 in total

1.  Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA.

Authors:  J Wuyts; Y Van de Peer; R De Wachter
Journal:  Nucleic Acids Res       Date:  2001-12-15       Impact factor: 16.971

2.  GU receptors of double helices mediate tRNA movement in the ribosome.

Authors:  Matthieu G Gagnon; Sergey V Steinberg
Journal:  RNA       Date:  2002-07       Impact factor: 4.942

3.  On the occurrence of the T-loop RNA folding motif in large RNA molecules.

Authors:  Andrey S Krasilnikov; Alfonso Mondragón
Journal:  RNA       Date:  2003-06       Impact factor: 4.942

4.  Rfam: an RNA family database.

Authors:  Sam Griffiths-Jones; Alex Bateman; Mhairi Marshall; Ajay Khanna; Sean R Eddy
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

5.  Pfold: RNA secondary structure prediction using stochastic context-free grammars.

Authors:  Bjarne Knudsen; Jotun Hein
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

6.  Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale.

Authors:  Odile Lecompte; Raymond Ripp; Jean-Claude Thierry; Dino Moras; Olivier Poch
Journal:  Nucleic Acids Res       Date:  2002-12-15       Impact factor: 16.971

7.  The promise of a DNA taxonomy.

Authors:  Mark L Blaxter
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-04-29       Impact factor: 6.237

8.  ARB: a software environment for sequence data.

Authors:  Wolfgang Ludwig; Oliver Strunk; Ralf Westram; Lothar Richter; Harald Meier; Arno Buchner; Tina Lai; Susanne Steppi; Gangolf Jobb; Wolfram Förster; Igor Brettske; Stefan Gerber; Anton W Ginhart; Oliver Gross; Silke Grumann; Stefan Hermann; Ralf Jost; Andreas König; Thomas Liss; Ralph Lüssmann; Michael May; Björn Nonhoff; Boris Reichel; Robert Strehlow; Alexandros Stamatakis; Norbert Stuckmann; Alexander Vilbig; Michael Lenke; Thomas Ludwig; Arndt Bode; Karl-Heinz Schleifer
Journal:  Nucleic Acids Res       Date:  2004-02-25       Impact factor: 16.971

9.  Specific detection of Pacific oyster (Crassostrea gigas) larvae in plankton samples using nested polymerase chain reaction.

Authors:  Jawahar G Patil; Rasanthi M Gunasekera; Bruce E Deagle; Nicholas J Bax
Journal:  Mar Biotechnol (NY)       Date:  2005-03-15       Impact factor: 3.619

10.  Comparative analysis of the ribosomal components of the hydrogenosome-containing protist, Trichomonas vaginalis.

Authors:  Nobuko Arisue; Yasushi Maki; Hideji Yoshida; Akira Wada; Lidya B Sánchez; Miklós Müller; Tetsuo Hashimoto
Journal:  J Mol Evol       Date:  2004-07       Impact factor: 2.395
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