Literature DB >> 22385863

A delicate interplay of structure, dynamics, and thermodynamics for function: a high pressure NMR study of outer surface protein A.

Ryo Kitahara1, Alana K Simorellis, Kazumi Hata, Akihiro Maeno, Shigeyuki Yokoyama, Shohei Koide, Kazuyuki Akasaka.   

Abstract

Outer surface protein A (OspA) is a crucial protein in the infection of Borrelia burgdorferi causing Lyme disease. We studied conformational fluctuations of OspA with high-pressure (15)N/(1)H two-dimensional NMR along with high-pressure fluorescence spectroscopy. We found evidence within folded, native OspA for rapid local fluctuations of the polypeptide backbone in the nonglobular single layer β-sheet connecting the N- and C-terminal domains with τ << ms, which may give the two domains certain independence in mobility and thermodynamic stability. Furthermore, we found that folded, native OspA is in equilibrium (τ >> ms) with a minor conformer I, which is almost fully disordered and hydrated for the entire C-terminal part of the polypeptide chain from β8 to the C-terminus. Conformer I is characterized with ΔG(0) = 32 ± 9 kJ/mol and ΔV(0) = -140 ± 40 mL/mol, populating only ∼0.001% at 40°C at 0.1 MPa, pH 5.9. Because in the folded conformer the receptor binding epitope of OspA is buried in the C-terminal domain, its transition into conformer I under in vivo conditions may be critical for the infection of B. burgdorferi. The formation and stability of the peculiar conformer I are apparently supported by a large packing defect or cavity located in the C-terminal domain. Copyright Â
© 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22385863      PMCID: PMC3283806          DOI: 10.1016/j.bpj.2011.12.010

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  40 in total

Review 1.  The hydrogen exchange core and protein folding.

Authors:  R Li; C Woodward
Journal:  Protein Sci       Date:  1999-08       Impact factor: 6.725

2.  Close identity of a pressure-stabilized intermediate with a kinetic intermediate in protein folding.

Authors:  Ryo Kitahara; Kazuyuki Akasaka
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-10       Impact factor: 11.205

3.  Calorimetric dissection of thermal unfolding of OspA, a predominantly beta-sheet protein containing a single-layer beta-sheet.

Authors:  Tomoko Nakagawa; Hirotaka Shimizu; Karl Link; Akiko Koide; Shohei Koide; Atsuo Tamura
Journal:  J Mol Biol       Date:  2002-11-01       Impact factor: 5.469

4.  Thermodynamic fluctuations in protein molecules.

Authors:  A Cooper
Journal:  Proc Natl Acad Sci U S A       Date:  1976-08       Impact factor: 11.205

5.  Atomic-resolution crystal structure of Borrelia burgdorferi outer surface protein A via surface engineering.

Authors:  Koki Makabe; Valentina Tereshko; Grzegorz Gawlak; Shude Yan; Shohei Koide
Journal:  Protein Sci       Date:  2006-07-05       Impact factor: 6.725

6.  NMR studies of Borrelia burgdorferi OspA, a 28 kDa protein containing a single-layer beta-sheet.

Authors:  T N Pham; S Koide
Journal:  J Biomol NMR       Date:  1998-05       Impact factor: 2.835

7.  A stable single-layer beta-sheet without a hydrophobic core.

Authors:  T N Pham; A Koide; S Koide
Journal:  Nat Struct Biol       Date:  1998-02

8.  Response of native and denatured hen lysozyme to high pressure studied by (15)N/(1)H NMR spectroscopy.

Authors:  Y O Kamatari; H Yamada; K Akasaka; J A Jones; C M Dobson; L J Smith
Journal:  Eur J Biochem       Date:  2001-03

9.  Pressure response of protein backbone structure. Pressure-induced amide 15N chemical shifts in BPTI.

Authors:  K Akasaka; H Li; H Yamada; R Li; T Thoresen; C K Woodward
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

10.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

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  11 in total

1.  Cavity as a source of conformational fluctuation and high-energy state: high-pressure NMR study of a cavity-enlarged mutant of T4 lysozyme.

Authors:  Akihiro Maeno; Daniel Sindhikara; Fumio Hirata; Renee Otten; Frederick W Dahlquist; Shigeyuki Yokoyama; Kazuyuki Akasaka; Frans A A Mulder; Ryo Kitahara
Journal:  Biophys J       Date:  2015-01-06       Impact factor: 4.033

2.  Analysis of O2-binding Sites in Proteins Using Gas-Pressure NMR Spectroscopy: Outer Surface Protein A.

Authors:  Takahiro Kawamura; Takuro Wakamoto; Soichiro Kitazawa; Shun Sakuraba; Tomoshi Kameda; Ryo Kitahara
Journal:  Biophys J       Date:  2017-05-09       Impact factor: 4.033

3.  Volume of Hsp90 ligand binding and the unfolding phase diagram as a function of pressure and temperature.

Authors:  Vytautas Petrauskas; Joana Gylytė; Zigmantas Toleikis; Piotras Cimmperman; Daumantas Matulis
Journal:  Eur Biophys J       Date:  2013-01-05       Impact factor: 1.733

4.  Transient conformational fluctuation of TePixD during a reaction.

Authors:  Kunisato Kuroi; Koji Okajima; Masahiko Ikeuchi; Satoru Tokutomi; Masahide Terazima
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-29       Impact factor: 11.205

5.  How internal cavities destabilize a protein.

Authors:  Mengjun Xue; Takuro Wakamoto; Camilla Kejlberg; Yuichi Yoshimura; Tania Aaquist Nielsen; Michael Wulff Risør; Kristian Wejse Sanggaard; Ryo Kitahara; Frans A A Mulder
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-30       Impact factor: 11.205

6.  Water-Protein Interactions Coupled with Protein Conformational Transition.

Authors:  Soichiro Kitazawa; Yu Aoshima; Takuro Wakamoto; Ryo Kitahara
Journal:  Biophys J       Date:  2018-08-08       Impact factor: 4.033

7.  Structural basis for the dissociation of α-synuclein fibrils triggered by pressure perturbation of the hydrophobic core.

Authors:  Guilherme A P de Oliveira; Mayra de A Marques; Carolina Cruzeiro-Silva; Yraima Cordeiro; Caroline Schuabb; Adolfo H Moraes; Roland Winter; Hartmut Oschkinat; Debora Foguel; Mônica S Freitas; Jerson L Silva
Journal:  Sci Rep       Date:  2016-11-30       Impact factor: 4.379

8.  Amide hydrogens reveal a temperature-dependent structural transition that enhances site-II Ca2+-binding affinity in a C-domain mutant of cardiac troponin C.

Authors:  Tiago Veltri; Guilherme A P de Oliveira; Ewa A Bienkiewicz; Fernando L Palhano; Mayra de A Marques; Adolfo H Moraes; Jerson L Silva; Martha M Sorenson; Jose R Pinto
Journal:  Sci Rep       Date:  2017-04-06       Impact factor: 4.379

9.  Tick receptor for outer surface protein A from Ixodes ricinus - the first intrinsically disordered protein involved in vector-microbe recognition.

Authors:  Anna Urbanowicz; Dominik Lewandowski; Kamil Szpotkowski; Marek Figlerowicz
Journal:  Sci Rep       Date:  2016-04-26       Impact factor: 4.379

10.  Detecting O2 binding sites in protein cavities.

Authors:  Ryo Kitahara; Yuichi Yoshimura; Mengjun Xue; Tomoshi Kameda; Frans A A Mulder
Journal:  Sci Rep       Date:  2016-02-02       Impact factor: 4.379

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