Literature DB >> 9477939

Effect of pressure on individual hydrogen bonds in proteins. Basic pancreatic trypsin inhibitor.

H Li1, H Yamada, K Akasaka.   

Abstract

By performing two-dimensional 1H NMR measurements at 750 MHz at varying hydrostatic pressure (1-2000 bar) in an aqueous environment (90% 1H2O/10% 2H2O), we found that the signals of the peptide NH protons of basic pancreatic trypsin inhibitor (BPTI) in the folded state shift their positions linearly and reversibly with pressure. The strong tendency for low-field shifts of these protons indicates that most of the amide groups form hydrogen bonds either with carbonyls or with water and that these hydrogen bonds are shortened by pressure. The NH protons interacting favorably with solvent water tend to exhibit larger pressure-induced shifts than others, showing that the shift can be used as a diagnostic probe for the hydrogen bonding state of an NH group with water. Furthermore, we estimated shortening of individual H...O distances of the NH...O=C hydrogen bonds at 2000 bar on the basis of the empirical shift-distance correlation for BPTI. The estimated shortened distances varied considerably from site to site in the range of 0-0.11 A, larger in the turn but smaller in the interiors of secondary structures. These variations suggest that the volume fluctuation is heterogeneous within BPTI and that high-pressure NMR at high field can offer a unique opportunity for detecting microscopic structural fluctuation in proteins.

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Year:  1998        PMID: 9477939     DOI: 10.1021/bi972288j

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  27 in total

1.  Pressure-dependent changes in the structure of the melittin alpha-helix determined by NMR.

Authors:  M Iwadate; T Asakura; P V Dubovskii; H Yamada; K Akasaka; M P Williamson
Journal:  J Biomol NMR       Date:  2001-02       Impact factor: 2.835

Review 2.  Protein compressibility, dynamics, and pressure.

Authors:  D P Kharakoz
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

3.  Effect of pressure on the tertiary structure and dynamics of folded basic pancreatic trypsin inhibitor.

Authors:  H Li; H Yamada; K Akasaka
Journal:  Biophys J       Date:  1999-11       Impact factor: 4.033

4.  Close identity of a pressure-stabilized intermediate with a kinetic intermediate in protein folding.

Authors:  Ryo Kitahara; Kazuyuki Akasaka
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-10       Impact factor: 11.205

5.  High-pressure 1H NMR study of pressure-induced structural changes in the heme environments of metcyanomyoglobins.

Authors:  Ryo Kitahara; Minoru Kato; Yoshihiro Taniguchi
Journal:  Protein Sci       Date:  2003-02       Impact factor: 6.725

6.  Combined chemical shift changes and amino acid specific chemical shift mapping of protein-protein interactions.

Authors:  Frank H Schumann; Hubert Riepl; Till Maurer; Wolfram Gronwald; Klaus-Peter Neidig; Hans Robert Kalbitzer
Journal:  J Biomol NMR       Date:  2007-10-23       Impact factor: 2.835

7.  High pressure NMR study of a small protein, gurmarin.

Authors:  K Inoue; H Yamada; T Imoto; K Akasaka
Journal:  J Biomol NMR       Date:  1998-11       Impact factor: 2.835

8.  Microbial diversity and adaptation to high hydrostatic pressure in deep-sea hydrothermal vents prokaryotes.

Authors:  Mohamed Jebbar; Bruno Franzetti; Eric Girard; Philippe Oger
Journal:  Extremophiles       Date:  2015-06-23       Impact factor: 2.395

9.  A hypothesis to reconcile the physical and chemical unfolding of proteins.

Authors:  Guilherme A P de Oliveira; Jerson L Silva
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-11       Impact factor: 11.205

10.  High-pressure refolding of bikunin: efficacy and thermodynamics.

Authors:  Matthew B Seefeldt; Jun Ouyang; Wayne A Froland; John F Carpenter; Theodore W Randolph
Journal:  Protein Sci       Date:  2004-10       Impact factor: 6.725

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