Literature DB >> 27566173

(13)C-NMR studies on disulfide bond isomerization in bovine pancreatic trypsin inhibitor (BPTI).

Mitsuhiro Takeda1,2, Yohei Miyanoiri1, Tsutomu Terauchi3,4, Masatsune Kainosho5,6.   

Abstract

Conformational isomerization of disulfide bonds is associated with the dynamics and thus the functional aspects of proteins. However, our understanding of the isomerization is limited by experimental difficulties in probing it. We explored the disulfide conformational isomerization of the Cys14-Cys38 disulfide bond in bovine pancreatic trypsin inhibitor (BPTI), by performing an NMR line-shape analysis of its Cys carbon peaks. In this approach, 1D (13)C spectra were recorded at small temperature intervals for BPTI samples selectively labeled with site-specifically (13)C-enriched Cys, and the recorded peaks were displayed in the order of the temperature after the spectral scales were normalized to a carbon peak. Over the profile of the line-shape, exchange broadening that altered with temperature was manifested for the carbon peaks of Cys14 and Cys38. The Cys14-Cys38 disulfide bond reportedly exists in equilibrium between a high-populated (M) and two low-populated states (m c14 and m c38). Consistent with the three-site exchange model, biphasic exchange broadening arising from the two processes was observed for the peak of the Cys14 α-carbon. As the exchange broadening is maximized when the exchange rate equals the chemical shift difference in Hz between equilibrating sites, semi-quantitative information that was useful for establishing conditions for (13)C relaxation dispersion experiments was obtained through the carbon line-shape profile. With respect to the m c38 isomerization, the (1)H-(13)C signals at the β-position of the minor state were resolved from the major peaks and detected by exchange experiments at a low temperature.

Entities:  

Keywords:  13C NMR; Disulfide bond isomerization; Exchange broadening; Site-specific 13C enrichment

Mesh:

Substances:

Year:  2016        PMID: 27566173     DOI: 10.1007/s10858-016-0055-8

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  55 in total

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Authors:  Bryan Schmidt; Lorraine Ho; Philip J Hogg
Journal:  Biochemistry       Date:  2006-06-20       Impact factor: 3.162

5.  Intracellular expression of BPTI fusion proteins and single column cleavage/affinity purification by chymotrypsin.

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Journal:  Protein Eng       Date:  1991-06

6.  Rigidification of a flexible protease inhibitor variant upon binding to trypsin.

Authors:  W Miachel Hanson; Gretchen J Domek; Martin P Horvath; David P Goldenberg
Journal:  J Mol Biol       Date:  2006-11-07       Impact factor: 5.469

7.  Probing chemical shifts of invisible states of proteins with relaxation dispersion NMR spectroscopy: how well can we do?

Authors:  D Flemming Hansen; Pramodh Vallurupalli; Patrik Lundström; Philipp Neudecker; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2008-02-01       Impact factor: 15.419

8.  13C-13C NOESY: an attractive alternative for studying large macromolecules.

Authors:  Ivano Bertini; Isabella C Felli; Rainer Kümmerle; Detlef Moskau; Roberta Pierattelli
Journal:  J Am Chem Soc       Date:  2004-01-21       Impact factor: 15.419

9.  Carbonyl carbon transverse relaxation dispersion measurements and ms-micros timescale motion in a protein hydrogen bond network.

Authors:  Rieko Ishima; James Baber; John M Louis; Dennis A Torchia
Journal:  J Biomol NMR       Date:  2004-06       Impact factor: 2.835

10.  Disulfide bond isomerization in basic pancreatic trypsin inhibitor: multisite chemical exchange quantified by CPMG relaxation dispersion and chemical shift modeling.

Authors:  Michael J Grey; Chunyu Wang; Arthur G Palmer
Journal:  J Am Chem Soc       Date:  2003-11-26       Impact factor: 15.419

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  3 in total

1.  Structural basis for ligand binding to an enzyme by a conformational selection pathway.

Authors:  Michael Kovermann; Christin Grundström; A Elisabeth Sauer-Eriksson; Uwe H Sauer; Magnus Wolf-Watz
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-30       Impact factor: 11.205

2.  Conformational exchange in the potassium channel blocker ShK.

Authors:  Naoto Iwakawa; Nicola J Baxter; Dorothy C C Wai; Nicholas J Fowler; Rodrigo A V Morales; Kenji Sugase; Raymond S Norton; Mike P Williamson
Journal:  Sci Rep       Date:  2019-12-17       Impact factor: 4.379

Review 3.  Revisiting the Formation of a Native Disulfide Bond: Consequences for Protein Regeneration and Beyond.

Authors:  Mahesh Narayan
Journal:  Molecules       Date:  2020-11-16       Impact factor: 4.411

  3 in total

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