Literature DB >> 26734986

Solution NMR Spectroscopy for the Study of Enzyme Allostery.

George P Lisi1, J Patrick Loria1,2.   

Abstract

Allostery is a ubiquitous biological regulatory process in which distant binding sites within a protein or enzyme are functionally and thermodynamically coupled. Allosteric interactions play essential roles in many enzymological mechanisms, often facilitating formation of enzyme-substrate complexes and/or product release. Thus, elucidating the forces that drive allostery is critical to understanding the complex transformations of biomolecules. Currently, a number of models exist to describe allosteric behavior, taking into account energetics as well as conformational rearrangements and fluctuations. In the following Review, we discuss the use of solution NMR techniques designed to probe allosteric mechanisms in enzymes. NMR spectroscopy is unequaled in its ability to detect structural and dynamical changes in biomolecules, and the case studies presented herein demonstrate the range of insights to be gained from this valuable method. We also provide a detailed technical discussion of several specialized NMR experiments that are ideally suited for the study of enzymatic allostery.

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Year:  2016        PMID: 26734986      PMCID: PMC4937494          DOI: 10.1021/acs.chemrev.5b00541

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  293 in total

1.  Evolutionarily conserved pathways of energetic connectivity in protein families.

Authors:  S W Lockless; R Ranganathan
Journal:  Science       Date:  1999-10-08       Impact factor: 47.728

2.  Estimating the time scale of chemical exchange of proteins from measurements of transverse relaxation rates in solution.

Authors:  R Ishima; D A Torchia
Journal:  J Biomol NMR       Date:  1999-08       Impact factor: 2.835

Review 3.  Folding funnels and conformational transitions via hinge-bending motions.

Authors:  S Kumar; B Ma; C J Tsai; H Wolfson; R Nussinov
Journal:  Cell Biochem Biophys       Date:  1999       Impact factor: 2.194

Review 4.  The development and therapeutic potential of protein kinase inhibitors.

Authors:  P Cohen
Journal:  Curr Opin Chem Biol       Date:  1999-08       Impact factor: 8.822

5.  Efficient expression, purification and crystallisation of two hyperthermostable enzymes of histidine biosynthesis.

Authors:  R Thoma; G Obmolova; D A Lang; M Schwander; P Jenö; R Sterner; M Wilmanns
Journal:  FEBS Lett       Date:  1999-07-02       Impact factor: 4.124

6.  What is the true structure of liganded haemoglobin?

Authors:  J R Tame
Journal:  Trends Biochem Sci       Date:  1999-10       Impact factor: 13.807

7.  Mobilization of the A-kinase N-myristate through an isoform-specific intermolecular switch.

Authors:  M Gangal; T Clifford; J Deich; X Cheng; S S Taylor; D A Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

8.  Crystal structure of an aminoglycoside 6'-N-acetyltransferase: defining the GCN5-related N-acetyltransferase superfamily fold.

Authors:  L E Wybenga-Groot; K Draker; G D Wright; A M Berghuis
Journal:  Structure       Date:  1999-05       Impact factor: 5.006

9.  A TROSY CPMG sequence for characterizing chemical exchange in large proteins.

Authors:  J P Loria; M Rance; A G Palmer
Journal:  J Biomol NMR       Date:  1999-10       Impact factor: 2.835

10.  Tryptophan fluorescence monitors multiple conformational changes required for glutamine phosphoribosylpyrophosphate amidotransferase interdomain signaling and catalysis.

Authors:  S Chen; J W Burgner; J M Krahn; J L Smith; H Zalkin
Journal:  Biochemistry       Date:  1999-09-07       Impact factor: 3.162

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  43 in total

1.  A Biophysical Perspective on Enzyme Catalysis.

Authors:  Pratul K Agarwal
Journal:  Biochemistry       Date:  2018-12-18       Impact factor: 3.162

2.  Identifying coupled clusters of allostery participants through chemical shift perturbations.

Authors:  Yunyao Xu; Dongyu Zhang; Rivkah Rogawski; Crina M Nimigean; Ann E McDermott
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-24       Impact factor: 11.205

Review 3.  Tailoring Proteins to Re-Evolve Nature: A Short Review.

Authors:  Angelica Jimenez-Rosales; Miriam V Flores-Merino
Journal:  Mol Biotechnol       Date:  2018-12       Impact factor: 2.695

Review 4.  Conformational Sub-states and Populations in Enzyme Catalysis.

Authors:  P K Agarwal; N Doucet; C Chennubhotla; A Ramanathan; C Narayanan
Journal:  Methods Enzymol       Date:  2016-07-09       Impact factor: 1.600

Review 5.  Applications of NMR and computational methodologies to study protein dynamics.

Authors:  Chitra Narayanan; Khushboo Bafna; Louise D Roux; Pratul K Agarwal; Nicolas Doucet
Journal:  Arch Biochem Biophys       Date:  2017-05-05       Impact factor: 4.013

6.  Optimization of Conformational Dynamics in an Epistatic Evolutionary Trajectory.

Authors:  Mariano M González; Luciano A Abriata; Pablo E Tomatis; Alejandro J Vila
Journal:  Mol Biol Evol       Date:  2016-03-15       Impact factor: 16.240

7.  Cracking the allosteric code of NMR chemical shifts.

Authors:  Bryan VanSchouwen; Giuseppe Melacini
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-10       Impact factor: 11.205

8.  Chemical shift imprint of intersubunit communication in a symmetric homodimer.

Authors:  Bradley T Falk; Paul J Sapienza; Andrew L Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-27       Impact factor: 11.205

Review 9.  NMR and computational methods for molecular resolution of allosteric pathways in enzyme complexes.

Authors:  Kyle W East; Erin Skeens; Jennifer Y Cui; Helen B Belato; Brandon Mitchell; Rohaine Hsu; Victor S Batista; Giulia Palermo; George P Lisi
Journal:  Biophys Rev       Date:  2019-12-14

10.  1H, 13C, 15N backbone and side chain resonance assignment of the HNH nuclease from Streptococcus pyogenes CRISPR-Cas9.

Authors:  Helen B Belato; Kyle W East; George P Lisi
Journal:  Biomol NMR Assign       Date:  2019-08-03       Impact factor: 0.746

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