Literature DB >> 10512837

Enzyme dynamics and activity: time-scale dependence of dynamical transitions in glutamate dehydrogenase solution.

R M Daniel1, J L Finney, V Réat, R Dunn, M Ferrand, J C Smith.   

Abstract

We have examined the temperature dependence of motions in a cryosolution of the enzyme glutamate dehydrogenase (GDH) and compared these with activity. Dynamic neutron scattering was performed with two instruments of different energy resolution, permitting the separate determination of the average dynamical mean square displacements on the sub-approximately 100 ps and sub-approximately 5 ns time scales. The results demonstrate a marked dependence on the time scale of the temperature profile of the mean square displacement. The lowest temperature at which anharmonic motion is observed is heavily dependent on the time window of the instrument used to observe the dynamics. Several dynamical transitions (inflexions of the mean squared displacement) are observed in the slower dynamics. Comparison with the temperature profile of the activity of the enzyme in the same solvent reveals dynamical transitions that have no effect on GDH function.

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Year:  1999        PMID: 10512837      PMCID: PMC1300498          DOI: 10.1016/S0006-3495(99)77058-X

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  23 in total

1.  Protein dynamics. Vibrational coupling, spectral broadening mechanisms, and anharmonicity effects in carbonmonoxy heme proteins studied by the temperature dependence of the Soret band lineshape.

Authors:  A Di Pace; A Cupane; M Leone; E Vitrano; L Cordone
Journal:  Biophys J       Date:  1992-08       Impact factor: 4.033

2.  Crystalline ribonuclease A loses function below the dynamical transition at 220 K.

Authors:  B F Rasmussen; A M Stock; D Ringe; G A Petsko
Journal:  Nature       Date:  1992-06-04       Impact factor: 49.962

3.  Effects of temperature on protein structure and dynamics: X-ray crystallographic studies of the protein ribonuclease-A at nine different temperatures from 98 to 320 K.

Authors:  R F Tilton; J C Dewan; G A Petsko
Journal:  Biochemistry       Date:  1992-03-10       Impact factor: 3.162

Review 4.  Protein hydration and function.

Authors:  J A Rupley; G Careri
Journal:  Adv Protein Chem       Date:  1991

5.  Harmonic behavior of trehalose-coated carbon-monoxy-myoglobin at high temperature.

Authors:  L Cordone; M Ferrand; E Vitrano; G Zaccai
Journal:  Biophys J       Date:  1999-02       Impact factor: 4.033

6.  Temperature dependence of the low frequency dynamics of myoglobin. Measurement of the vibrational frequency distribution by inelastic neutron scattering.

Authors:  S Cusack; W Doster
Journal:  Biophys J       Date:  1990-07       Impact factor: 4.033

7.  Temperature-dependent X-ray diffraction as a probe of protein structural dynamics.

Authors:  H Frauenfelder; G A Petsko; D Tsernoglou
Journal:  Nature       Date:  1979-08-16       Impact factor: 49.962

8.  Dynamical transition of myoglobin revealed by inelastic neutron scattering.

Authors:  W Doster; S Cusack; W Petry
Journal:  Nature       Date:  1989-02-23       Impact factor: 49.962

9.  Glutamate dehydrogenase from the extremely thermophilic archaebacterial isolate AN1.

Authors:  R C Hudson; L D Ruttersmith; R M Daniel
Journal:  Biochim Biophys Acta       Date:  1993-10-06

10.  Protein dynamics. Mössbauer spectroscopy on deoxymyoglobin crystals.

Authors:  F Parak; E W Knapp; D Kucheida
Journal:  J Mol Biol       Date:  1982-10-15       Impact factor: 5.469

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  26 in total

1.  Enzyme activity and dynamics: xylanase activity in the absence of fast anharmonic dynamics.

Authors:  R V Dunn; V Réat; J Finney; M Ferrand; J C Smith; R M Daniel
Journal:  Biochem J       Date:  2000-03-01       Impact factor: 3.857

2.  Radially softening diffusive motions in a globular protein.

Authors:  S Dellerue; A J Petrescu; J C Smith; M C Bellissent-Funel
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

3.  Temperature dependence of protein dynamics: computer simulation analysis of neutron scattering properties.

Authors:  Jennifer A Hayward; Jeremy C Smith
Journal:  Biophys J       Date:  2002-03       Impact factor: 4.033

4.  The inverse relationship between protein dynamics and thermal stability.

Authors:  A M Tsai; T J Udovic; D A Neumann
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

5.  Solvent dependence of dynamic transitions in protein solutions.

Authors:  V Réat; R Dunn; M Ferrand; J L Finney; R M Daniel; J C Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-29       Impact factor: 11.205

6.  Dynamic transition associated with the thermal denaturation of a small Beta protein.

Authors:  Daniela Russo; Javier Pérez; Jean-Marc Zanotti; Michel Desmadril; Dominique Durand
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

7.  Molecular dynamics decomposition of temperature-dependent elastic neutron scattering by a protein solution.

Authors:  Jennifer A Hayward; John L Finney; Roy M Daniel; Jeremy C Smith
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

Review 8.  Structure, dynamics and reactions of protein hydration water.

Authors:  Jeremy C Smith; Franci Merzel; Ana-Nicoleta Bondar; Alexander Tournier; Stefan Fischer
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-08-29       Impact factor: 6.237

Review 9.  The effect of water on protein dynamics.

Authors:  G Zaccai
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-08-29       Impact factor: 6.237

10.  Neutron frequency windows and the protein dynamical transition.

Authors:  Torsten Becker; Jennifer A Hayward; John L Finney; Roy M Daniel; Jeremy C Smith
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

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