Literature DB >> 18825126

Large-scale evaluation of protein reductive methylation for improving protein crystallization.

Youngchang Kim, Pearl Quartey, Hui Li, Lour Volkart, Catherine Hatzos, Changsoo Chang, Boguslaw Nocek, Marianne Cuff, Jerzy Osipiuk, Kemin Tan, Yao Fan, Lance Bigelow, Natalia Maltseva, Ruiying Wu, Maria Borovilos, Erika Duggan, Min Zhou, T Andrew Binkowski, Rong-guang Zhang, Andrzej Joachimiak.   

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Year:  2008        PMID： 18825126      PMCID： PMC2678869          DOI： 10.1038/nmeth1008-853

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  16 in total

1.  Residue frequencies and pairing preferences at protein-protein interfaces.

Authors:  F Glaser; D M Steinberg; I A Vakser; N Ben-Tal
Journal:  Proteins       Date:  2001-05-01

2.  Automation of protein purification for structural genomics.

Authors:  Youngchang Kim; Irina Dementieva; Min Zhou; Ruiying Wu; Lour Lezondra; Pearl Quartey; Grazyna Joachimiak; Olga Korolev; Hui Li; Andrzej Joachimiak
Journal:  J Struct Funct Genomics       Date:  2004

Review 3.  Chemical modifications of proteins: history and applications.

Authors:  G E Means; R E Feeney
Journal:  Bioconjug Chem       Date:  1990 Jan-Feb       Impact factor: 4.774

4.  Reductive alkylation of amino groups.

Authors:  G E Means
Journal:  Methods Enzymol       Date:  1977       Impact factor: 1.600

Review 5.  Reductive alkylation of proteins.

Authors:  G E Means; R E Feeney
Journal:  Anal Biochem       Date:  1995-01-01       Impact factor: 3.365

6.  Structural consequences of reductive methylation of lysine residues in hen egg white lysozyme: an X-ray analysis at 1.8-A resolution.

Authors:  W R Rypniewski; H M Holden; I Rayment
Journal:  Biochemistry       Date:  1993-09-21       Impact factor: 3.162

7.  A simple method for displaying the hydropathic character of a protein.

Authors:  J Kyte; R F Doolittle
Journal:  J Mol Biol       Date:  1982-05-05       Impact factor: 5.469

8.  A pivotal role for reductive methylation in the de novo crystallization of a ternary complex composed of Yersinia pestis virulence factors YopN, SycN and YscB.

Authors:  Florian D Schubot; David S Waugh
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-10-20

9.  Contribution of unusual arginine-arginine short-range interactions to stabilization and recognition in proteins.

Authors:  A Magalhaes; B Maigret; J Hoflack; J N Gomes; H A Scheraga
Journal:  J Protein Chem       Date:  1994-02

10.  (NZ)CH...O contacts assist crystallization of a ParB-like nuclease.

Authors:  Neil Shaw; Chongyun Cheng; Wolfram Tempel; Jessie Chang; Joseph Ng; Xin-Yu Wang; Sarah Perrett; John Rose; Zihe Rao; Bi-Cheng Wang; Zhi-Jie Liu
Journal:  BMC Struct Biol       Date:  2007-07-07
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  45 in total

1.  'Seeding' with protease to optimize protein crystallization conditions in in situ proteolysis.

Authors:  Jinguang Huang; Yanmei Gong; Dan Huang; Lesley Haire; Junfeng Liu; Youliang Peng
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-04-24

2.  Structure-guided expansion of the substrate range of methylmalonyl coenzyme A synthetase (MatB) of Rhodopseudomonas palustris.

Authors:  Heidi A Crosby; Katherine C Rank; Ivan Rayment; Jorge C Escalante-Semerena
Journal:  Appl Environ Microbiol       Date:  2012-07-06       Impact factor: 4.792

3.  New surface contacts formed upon reductive lysine methylation: improving the probability of protein crystallization.

Authors:  Pawel Sledz; Heping Zheng; Krzysztof Murzyn; Maksymilian Chruszcz; Matthew D Zimmerman; Mahendra D Chordia; Andrzej Joachimiak; Wladek Minor
Journal:  Protein Sci       Date:  2010-07       Impact factor: 6.725

4.  Structural studies of ROK fructokinase YdhR from Bacillus subtilis: insights into substrate binding and fructose specificity.

Authors:  B Nocek; A J Stein; R Jedrzejczak; M E Cuff; H Li; L Volkart; A Joachimiak
Journal:  J Mol Biol       Date:  2010-12-23       Impact factor: 5.469

5.  Predicting protein crystallization propensity from protein sequence.

Authors:  György Babnigg; Andrzej Joachimiak
Journal:  J Struct Funct Genomics       Date:  2010-02-23

6.  Structural biochemistry of nuclear actin-related proteins 4 and 8 reveals their interaction with actin.

Authors:  Sebastian Fenn; Dennis Breitsprecher; Christian B Gerhold; Gregor Witte; Jan Faix; Karl-Peter Hopfner
Journal:  EMBO J       Date:  2011-04-15       Impact factor: 11.598

7.  Crystallization of a pentapeptide-repeat protein by reductive cyclic pentylation of free amines with glutaraldehyde.

Authors:  Matthew W Vetting; Subray S Hegde; John S Blanchard
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-04-18

Review 8.  X-ray crystallography over the past decade for novel drug discovery - where are we heading next?

Authors:  Heping Zheng; Katarzyna B Handing; Matthew D Zimmerman; Ivan G Shabalin; Steven C Almo; Wladek Minor
Journal:  Expert Opin Drug Discov       Date:  2015-07-15       Impact factor: 6.098

9.  The conserved XPF:ERCC1-like Zip2:Spo16 complex controls meiotic crossover formation through structure-specific DNA binding.

Authors:  Kanika Arora; Kevin D Corbett
Journal:  Nucleic Acids Res       Date:  2019-03-18       Impact factor: 16.971

10.  Expression, crystallization and preliminary crystallographic data analysis of PigI, a putative L-prolyl-AMP ligase from the prodigiosin synthetic pathway in Serratia.

Authors:  Ning Han; Tingting Ran; Xiangdi Lou; Yanyan Gao; Jianhua He; Lin Tang; Dongqing Xu; Weiwu Wang
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-04-17       Impact factor: 1.056
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