Literature DB >> 11263491

The beta clamp targets DNA polymerase IV to DNA and strongly increases its processivity.

J Wagner1, S Fujii, P Gruz, T Nohmi, R P Fuchs.   

Abstract

The recent discovery of a new family of ubiquitous DNA polymerases involved in translesion synthesis has shed new light onto the biochemical basis of mutagenesis. Among these polymerases, the dinB gene product (Pol IV) is involved in mutagenesis in Escherichia coli. We show here that the activity of native Pol IV is drastically modified upon interaction with the beta subunit, the processivity factor of DNA Pol III. In the absence of the beta subunit Pol IV is strictly distributive and no stable complex between Pol IV and DNA could be detected. In contrast, the beta clamp allows Pol IV to form a stable initiation complex (t 1/2 approximately 2.3 min), which leads to a dramatic increase in the processivity of PoI IV reaching an average of 300-400 nucleotides. In vivo, the beta processivity subunit may target DNA Pol IV to its substrate, generating synthesis tracks much longer than previously thought.

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Year:  2000        PMID: 11263491      PMCID: PMC1083781          DOI: 10.1093/embo-reports/kvd109

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  14 in total

1.  The many faces of DNA polymerases: strategies for mutagenesis and for mutational avoidance.

Authors:  E C Friedberg; W J Feaver; V L Gerlach
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-23       Impact factor: 11.205

2.  A model for Escherichia coli DNA polymerase III holoenzyme assembly at primer/template ends. DNA triggers a change in binding specificity of the gamma complex clamp loader.

Authors:  B Ason; J G Bertram; M M Hingorani; J M Beechem; M O'Donnell; M F Goodman; L B Bloom
Journal:  J Biol Chem       Date:  2000-01-28       Impact factor: 5.157

3.  Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis.

Authors:  M Tang; P Pham; X Shen; J S Taylor; M O'Donnell; R Woodgate; M F Goodman
Journal:  Nature       Date:  2000-04-27       Impact factor: 49.962

4.  The mutagenesis protein UmuC is a DNA polymerase activated by UmuD', RecA, and SSB and is specialized for translesion replication.

Authors:  N B Reuven; G Arad; A Maor-Shoshani; Z Livneh
Journal:  J Biol Chem       Date:  1999-11-05       Impact factor: 5.157

5.  Gel fidelity assay measuring nucleotide misinsertion, exonucleolytic proofreading, and lesion bypass efficiencies.

Authors:  S Creighton; L B Bloom; M F Goodman
Journal:  Methods Enzymol       Date:  1995       Impact factor: 1.600

Review 6.  Replication of damaged DNA: molecular defect in xeroderma pigmentosum variant cells.

Authors:  A M Cordonnier; R P Fuchs
Journal:  Mutat Res       Date:  1999-10-22       Impact factor: 2.433

7.  Purification and characterization of an inducible Escherichia coli DNA polymerase capable of insertion and bypass at abasic lesions in DNA.

Authors:  C A Bonner; S K Randall; C Rayssiguier; M Radman; R Eritja; B E Kaplan; K McEntee; M F Goodman
Journal:  J Biol Chem       Date:  1988-12-15       Impact factor: 5.157

8.  All three SOS-inducible DNA polymerases (Pol II, Pol IV and Pol V) are involved in induced mutagenesis.

Authors:  R Napolitano; R Janel-Bintz; J Wagner; R P Fuchs
Journal:  EMBO J       Date:  2000-11-15       Impact factor: 11.598

9.  Processive DNA synthesis by DNA polymerase II mediated by DNA polymerase III accessory proteins.

Authors:  C A Bonner; P T Stukenberg; M Rajagopalan; R Eritja; M O'Donnell; K McEntee; H Echols; M F Goodman
Journal:  J Biol Chem       Date:  1992-06-05       Impact factor: 5.157

10.  Role of RecA protein in untargeted UV mutagenesis of bacteriophage lambda: evidence for the requirement for the dinB gene.

Authors:  A Brotcorne-Lannoye; G Maenhaut-Michel
Journal:  Proc Natl Acad Sci U S A       Date:  1986-06       Impact factor: 11.205

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  67 in total

1.  Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): an archaeal DinB-like DNA polymerase with lesion-bypass properties akin to eukaryotic poleta.

Authors:  F Boudsocq; S Iwai; F Hanaoka; R Woodgate
Journal:  Nucleic Acids Res       Date:  2001-11-15       Impact factor: 16.971

2.  Mechanism of DNA polymerase II-mediated frameshift mutagenesis.

Authors:  O J Becherel; R P Fuchs
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-10       Impact factor: 11.205

3.  The processivity factor beta controls DNA polymerase IV traffic during spontaneous mutagenesis and translesion synthesis in vivo.

Authors:  Nathalie Lenne-Samuel; Jérôme Wagner; Hélène Etienne; Robert P P Fuchs
Journal:  EMBO Rep       Date:  2001-12-19       Impact factor: 8.807

4.  Posttranslational modification of the umuD-encoded subunit of Escherichia coli DNA polymerase V regulates its interactions with the beta processivity clamp.

Authors:  Mark D Sutton; Issay Narumi; Graham C Walker
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

Review 5.  DNA replication fidelity in Escherichia coli: a multi-DNA polymerase affair.

Authors:  Iwona J Fijalkowska; Roel M Schaaper; Piotr Jonczyk
Journal:  FEMS Microbiol Rev       Date:  2012-04-05       Impact factor: 16.408

6.  An expanded view of bacterial DNA replication.

Authors:  Marie-Françoise Noirot-Gros; Etienne Dervyn; Ling Juan Wu; Peggy Mervelet; Jeffery Errington; S Dusko Ehrlich; Philippe Noirot
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

7.  Competitive processivity-clamp usage by DNA polymerases during DNA replication and repair.

Authors:  Francisco J López de Saro; Roxana E Georgescu; Myron F Goodman; Mike O'Donnell
Journal:  EMBO J       Date:  2003-12-01       Impact factor: 11.598

8.  Structural basis for recruitment of translesion DNA polymerase Pol IV/DinB to the beta-clamp.

Authors:  Karen A Bunting; S Mark Roe; Laurence H Pearl
Journal:  EMBO J       Date:  2003-11-03       Impact factor: 11.598

9.  Error-prone DNA polymerase IV is controlled by the stress-response sigma factor, RpoS, in Escherichia coli.

Authors:  Jill C Layton; Patricia L Foster
Journal:  Mol Microbiol       Date:  2003-10       Impact factor: 3.501

10.  Escherichia coli DNA polymerase IV (Pol IV), but not Pol II, dynamically switches with a stalled Pol III* replicase.

Authors:  Justin M H Heltzel; Robert W Maul; David W Wolff; Mark D Sutton
Journal:  J Bacteriol       Date:  2012-04-27       Impact factor: 3.490

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