Literature DB >> 9927471

A second-generation genetic linkage map of the domestic dog, Canis familiaris.

M W Neff1, K W Broman, C S Mellersh, K Ray, G M Acland, G D Aguirre, J S Ziegle, E A Ostrander, J Rine.   

Abstract

Purebred strains, pronounced phenotypic variation, and a high incidence of heritable disease make the domestic dog uniquely suited to complement genetic analyses in humans and mice. A comprehensive genetic linkage map would afford many opportunities in dogs, ranging from the positional cloning of disease genes to the dissection of quantitative differences in size, shape, and behavior. Here we report a canine linkage map with the number of mapped loci expanded to 276 and 10-cM coverage extended to 75-90% of the genome. Most of the 38 canine autosomes are likely represented in the collection of 39 autosomal linkage groups. Eight markers were sufficiently informative to detect linkage at distances of 10-13 cM, yet remained unlinked to any other marker. Taken together, the results suggested a genome size of about 27 M. As in other species, the genetic length varied between sexes, with the female autosomal distance being approximately 1.4-fold greater than that of male meioses. Fifteen markers anchored well-described genes on the map, thereby serving as landmarks for comparative mapping in dogs. We discuss the utility of the current map and outline steps necessary for future map improvement.

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Year:  1999        PMID: 9927471      PMCID: PMC1460484     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  37 in total

1.  Systematic detection of errors in genetic linkage data.

Authors:  S E Lincoln; E S Lander
Journal:  Genomics       Date:  1992-11       Impact factor: 5.736

2.  A maximum likelihood method for estimating genome length using genetic linkage data.

Authors:  A Chakravarti; L K Lasher; J E Reefer
Journal:  Genetics       Date:  1991-05       Impact factor: 4.562

3.  Influence of aberrant observations on high-resolution linkage analysis outcomes.

Authors:  K H Buetow
Journal:  Am J Hum Genet       Date:  1991-11       Impact factor: 11.025

4.  A specificity enhancer for polymerase chain reaction.

Authors:  T Hung; K Mak; K Fong
Journal:  Nucleic Acids Res       Date:  1990-08-25       Impact factor: 16.971

5.  Eighteen canine microsatellites.

Authors:  N G Holmes; H F Dickens; H L Parker; M M Binns; C S Mellersh; J Sampson
Journal:  Anim Genet       Date:  1995-04       Impact factor: 3.169

6.  Polymorphic DNA region adjacent to the 5' end of the human insulin gene.

Authors:  G I Bell; J H Karam; W J Rutter
Journal:  Proc Natl Acad Sci U S A       Date:  1981-09       Impact factor: 11.205

7.  The Giemsa banding pattern of the canine karyotype.

Authors:  J R Selden; P S Moorhead; M L Oehlert; D F Patterson
Journal:  Cytogenet Cell Genet       Date:  1975

8.  Variation of short tandem repeats within and between species belonging to the Canidae family.

Authors:  M Fredholm; A K Winterø
Journal:  Mamm Genome       Date:  1995-01       Impact factor: 2.957

Review 9.  Construction of a genetic linkage map in man using restriction fragment length polymorphisms.

Authors:  D Botstein; R L White; M Skolnick; R W Davis
Journal:  Am J Hum Genet       Date:  1980-05       Impact factor: 11.025

10.  Comparative mapping of canine and human proximal Xq and genetic analysis of canine X-linked severe combined immunodeficiency.

Authors:  S M Deschênes; J M Puck; A S Dutra; R L Somberg; P J Felsburg; P S Henthorn
Journal:  Genomics       Date:  1994-09-01       Impact factor: 5.736

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  62 in total

1.  Bayesian mapping of genome-wide epistatic imprinted loci for quantitative traits.

Authors:  Shize Li; Xin Wang; Jiahan Li; Tianfu Yang; Lingjiang Min; Yang Liu; Min Lin; Runqing Yang
Journal:  Theor Appl Genet       Date:  2012-02-16       Impact factor: 5.699

2.  Sex, not genotype, determines recombination levels in mice.

Authors:  Audrey Lynn; Stefanie Schrump; Jonathan Cherry; Terry Hassold; Patricia Hunt
Journal:  Am J Hum Genet       Date:  2005-08-17       Impact factor: 11.025

3.  Maximum-likelihood estimation of allelic dropout and false allele error rates from microsatellite genotypes in the absence of reference data.

Authors:  Paul C D Johnson; Daniel T Haydon
Journal:  Genetics       Date:  2006-12-18       Impact factor: 4.562

4.  A comprehensive linkage map of the dog genome.

Authors:  Aaron K Wong; Alison L Ruhe; Beth L Dumont; Kathryn R Robertson; Giovanna Guerrero; Sheila M Shull; Janet S Ziegle; Lee V Millon; Karl W Broman; Bret A Payseur; Mark W Neff
Journal:  Genetics       Date:  2009-12-04       Impact factor: 4.562

5.  Bayesian model selection for characterizing genomic imprinting effects and patterns.

Authors:  Runqing Yang; Xin Wang; Zeyuan Wu; Daniel R Prows; Min Lin
Journal:  Bioinformatics       Date:  2009-10-30       Impact factor: 6.937

6.  Genomic sweep and potential genetic rescue during limiting environmental conditions in an isolated wolf population.

Authors:  Jennifer R Adams; Leah M Vucetich; Philip W Hedrick; Rolf O Peterson; John A Vucetich
Journal:  Proc Biol Sci       Date:  2011-03-30       Impact factor: 5.349

7.  Microsatellite polymorphism and its association with body weight and selected morphometrics of farm red fox (Vulpes vulpes L.).

Authors:  Magdalena Zatoń-Dobrowolska; Anna Mucha; Heliodor Wierzbicki; David Morrice; Magdalena Moska; Maciej Dobrowolski; Piotr Przysiecki
Journal:  J Appl Genet       Date:  2014-05-13       Impact factor: 3.240

8.  An autosomal genetic linkage map of the domestic cat, Felis silvestris catus.

Authors:  Marilyn Menotti-Raymond; Victor A David; Alejandro A Schäffer; James F Tomlin; Eduardo Eizirik; Cornel Phillip; David Wells; Joan U Pontius; Steven S Hannah; Stephen J O'Brien
Journal:  Genomics       Date:  2008-12-13       Impact factor: 5.736

9.  Genome-wide linkage scan for loci associated with epilepsy in Belgian shepherd dogs.

Authors:  Anita M Oberbauer; Janelle M Belanger; Deborah I Grossman; Kelly R Regan; Thomas R Famula
Journal:  BMC Genet       Date:  2010-05-04       Impact factor: 2.797

10.  A first-generation microsatellite-based genetic linkage map of the Siberian jay (Perisoreus infaustus): insights into avian genome evolution.

Authors:  Sonja Jaari; Meng-Hua Li; Juha Merilä
Journal:  BMC Genomics       Date:  2009-01-03       Impact factor: 3.969

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